Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00576 ATGGGATGGAAGTCACATGGTTTGGCTTTTGCAGTAGTTGCTGTGTTGTTCTGTCACTTCAGTTTGGTTAGGTTTGCTCAAGCTCAATCTGCAAACGCCACCACTGACCCTTCTGAAGCAAGAGCTTTAAATTCAATCTTCAGCAAATGGGGTAAATCCGCAGACACAAGTGTGTGGAACATAAGTGGTGAACTATGCAGTGGAAGAGCCATTGACAGTACCTCCACCCCTGAAAGTTACAATCCATTCATCAGATGTGACTGTTCCTTTGACAGTGGAACTACTTGCCACATCACAGCATTGAGGGTCTATGCACTGAACGTGTTTGGTGAAATTCCAGAAGAGCTATGGACTCTCACCTATCTCAACAATTTAAATATTGGGCAAAATTACTTGACGGGTTCTCTGCCTCCAGCTATTGGAAATCTAACTCGTATGCAATACTTGACCCTTGGAATCAATAATTTATCAGGGGAGCTTCCTAAGGAATTGGGAAATCTTACAGAGTTAATAATACTGGCTTTTGGGTCTAACAATTTCTCAGGATCTCTCCCATCTGAACTTGGGAAACTCACAAAATTAGAAGAACTATACTTTGACAGTTGTGGAATTAGTGGCCCAATACCGTCCACATTTGCAGACCTTAGGAGTTTGAAAAAAGTATGGGCTTCAGACGTGGAACTCACAGGCAATATACCAAACTTCATAGGGAATTGGACTAGGCTTCAAGAATTGAGGTTTGAAGGCAATTCTTTTAATGGCTCCATACCCTCATCATTTTCCAACTTGACTTCTTTAACAGAATTGAGAATAAGTGGTTTATCTAATGGGAGCTCCTCACTGGAATTTGTACAGAATATGAAATCTTTGACTACCTTAGAATTGAGGAATAACAATATTTCTGGTTTGATTCCATCCTCCATTGGAGAGTTGCACAATTTGACCCTACTGGATTTGAGCTTCAATAACATCCAAGGACAAATTCCGGGATCAATTTTCAATTTGAGCTCGCTCTCTACCTTGTTTCTTGGAAATAATAAACTAAATGGCACCCTTCCGACTCAGATAGGTTCATCACTTCAATATATAGACCTGTCATACAATGATCTATCAGGCAGCCTCCCCTCTTGGGTAAACGAAGCAAATTTACAACTGAATTTAGTTGCTAACAACTTGTCAATAGATGATGGTTCAGATACCAGTGGCTTGCCATTTGGGCTCAACTGTCTCCAGAAAAATTTTCCATGCAATCGAGGTGTTGGAAGATATTCTGACTTTGCGATTAAGTGTGGCGGACCCCAGATTAGATCTACAGAAGGAATCATATATGAAAGGGAGAATGAGACACTTGGTCCTGCTACATACTTTGTTACTGATACAAGTAGATGGGCTGTTAGTAATGTTGGATTATTTAGGGGCAGTAATAATCCAGTATACACAAAATTTGTGTCTAATCAATTCAGTAACACTTTGAATACGGAGCTCTTCCAAACAGCACGAATTTCTCCTTCATCATTAAGATATTATGGCTTGGGGCTGGAAAATGGCTTTTACAACATCACCCTTCAATTTGCAGAAACAGCTATTCAGGATTCTGCTACATCATGGGAAAGTCTTGGGAGACGAGTCTTTGATATATATATTCAGGGGAATCTTGTTTTGAAAGATTTCGACATAAAAAAAGAAGCTGGGGGCATCTCGTTCAGAGCTGTCCAAAGGCAATTTAGGTTTGAAGTGACGGAAAACTATCTTGACATCCATCTCTTTTGGGCTGGAAAGGGGACATGTTGCATACCAGCCCAAGGTACTTATGGGCCCTTGATTCAAGCCATCCATGCTATTCCAGATTTTATACCTACTGTCAGTAACGAACCTCCAAGCAATAAAAGTAATAAAACAGGCCTTATTGTTGGAATTGTTGTTGGAGTTGGAGTTGTAAGCTTCATATCAGTTTTTGTGATTTTCTGTATCATTCGGAGAAGAAAACGTCAGCATGAGGATGAAGAGCTTTTAGGAATTGATACAATGCCATACACTTTCAGTTATTCTGAGTTGAAGAATGCTACAAATGACTTTAATCTCGAAAACAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGCACACTTAATGATGGAAGAGTTATTGCTGTGAAACAACTTTCAGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCAGCTGTACAACATCGTAATTTGGTCAAATTATATGGATGTTGCATTGAGGGAAATAACAAACTTCTTGTGTACGAGTATCTAGAGAATAAGAGTCTTGATCAAGGATTATTTGGAAAATCTTTAACCCTCAATTGGTCCACACGCTATGAAATCTGCTTGGGTGTTGCCAGAGGTTTAACTTATTTACATGAAGAGTCCCGTCTCCGCATTGTACACCGTGATGTGAAGGCTAGCAATATTTTGCTTGACTACGATCTTGTCCCCAAAATATCTGATTTTGGGTTGGCCAAATTGTACGATGATAAAAAGACCCACATAAGCACCCGTGTGGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACCGAGAAAGCAGATATATTTTCATTTGGTGTTGTTGCTCTTGAGTTGGTTAGTGGGAGGCCAAATGCTGATTCAAGTTTGGAAGGAGAGAAAGTGTATCTTCTACAATGGGCATGGCAGCTTCAGGAAAGCAACACTTTAATGGATCTGGTGGACCCTAGACTTTCAGAATTCAATGAGGAAGAAGTAAAACGTGTTCTGGGAATAGCACTTCTGTGCACTCAAACATCACCATCATTAAGACCATCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCGCTGTCACTTCAAAGCCTGGATACCTTGCTGACTGGAAATTTGATGATGTGAGCAGCTTCATGACTGACAGTGCAATCGAAGGATTCGATACAAGTTACCAGTTAGGAAGTACCAGCATGGTGGGTGGTGCAGACTATTCACCAGAAAGTGTTTCTAAACCGATCCTTAAGGATGCTCTTAATGAGGGTAGGTAA 3093 0.407 MGWKSHGLAFAVVAVLFCHFSLVRFAQAQSANATTDPSEARALNSIFSKWGKSADTSVWNISGELCSGRAIDSTSTPESYNPFIRCDCSFDSGTTCHITALRVYALNVFGEIPEELWTLTYLNNLNIGQNYLTGSLPPAIGNLTRMQYLTLGINNLSGELPKELGNLTELIILAFGSNNFSGSLPSELGKLTKLEELYFDSCGISGPIPSTFADLRSLKKVWASDVELTGNIPNFIGNWTRLQELRFEGNSFNGSIPSSFSNLTSLTELRISGLSNGSSSLEFVQNMKSLTTLELRNNNISGLIPSSIGELHNLTLLDLSFNNIQGQIPGSIFNLSSLSTLFLGNNKLNGTLPTQIGSSLQYIDLSYNDLSGSLPSWVNEANLQLNLVANNLSIDDGSDTSGLPFGLNCLQKNFPCNRGVGRYSDFAIKCGGPQIRSTEGIIYERENETLGPATYFVTDTSRWAVSNVGLFRGSNNPVYTKFVSNQFSNTLNTELFQTARISPSSLRYYGLGLENGFYNITLQFAETAIQDSATSWESLGRRVFDIYIQGNLVLKDFDIKKEAGGISFRAVQRQFRFEVTENYLDIHLFWAGKGTCCIPAQGTYGPLIQAIHAIPDFIPTVSNEPPSNKSNKTGLIVGIVVGVGVVSFISVFVIFCIIRRRKRQHEDEELLGIDTMPYTFSYSELKNATNDFNLENKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGNNKLLVYEYLENKSLDQGLFGKSLTLNWSTRYEICLGVARGLTYLHEESRLRIVHRDVKASNILLDYDLVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADIFSFGVVALELVSGRPNADSSLEGEKVYLLQWAWQLQESNTLMDLVDPRLSEFNEEEVKRVLGIALLCTQTSPSLRPSMSRVVAMLSGDIEVSAVTSKPGYLADWKFDDVSSFMTDSAIEGFDTSYQLGSTSMVGGADYSPESVSKPILKDALNEGR 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00576 1030 SUPERFAMILY Protein kinase-like (PK-like) 675 976 IPR011009 -
Viun11g00576 1030 ProSiteProfiles Protein kinase domain profile. 692 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00576 1030 SMART serkin_6 692 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00576 1030 Pfam Malectin domain 425 611 IPR021720 -
Viun11g00576 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Viun11g00576 1030 ProSiteProfiles Leucine-rich repeat profile. 313 335 IPR001611 GO:0005515
Viun11g00576 1030 FunFam Putative LRR receptor-like serine/threonine-protein kinase 768 971 - -
Viun11g00576 1030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 989 - -
Viun11g00576 1030 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515
Viun11g00576 1030 Gene3D Transferase(Phosphotransferase) domain 1 768 971 - -
Viun11g00576 1030 FunFam Leucine-rich repeat transmembrane protein kinase 37 276 - -
Viun11g00576 1030 FunFam Leucine-rich repeat receptor-like protein kinase 661 767 - -
Viun11g00576 1030 Pfam Protein tyrosine and serine/threonine kinase 693 959 IPR001245 GO:0004672|GO:0006468
Viun11g00576 1030 CDD STKc_IRAK 698 959 - -
Viun11g00576 1030 SMART LRR_typ_2 287 310 IPR003591 -
Viun11g00576 1030 SMART LRR_typ_2 311 334 IPR003591 -
Viun11g00576 1030 SMART LRR_typ_2 335 359 IPR003591 -
Viun11g00576 1030 SMART LRR_typ_2 143 167 IPR003591 -
Viun11g00576 1030 SUPERFAMILY L domain-like 95 396 - -
Viun11g00576 1030 Gene3D Ribonuclease Inhibitor 36 277 IPR032675 -
Viun11g00576 1030 FunFam Leucine-rich repeat receptor-like protein kinase 423 615 - -
Viun11g00576 1030 FunFam Putative LRR receptor-like serine/threonine-protein kinase 277 400 - -
Viun11g00576 1030 Gene3D Phosphorylase Kinase; domain 1 654 767 - -
Viun11g00576 1030 Gene3D Ribonuclease Inhibitor 278 398 IPR032675 -
Viun11g00576 1030 Gene3D - 425 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00576 Viun-Chr11 6283752 6296074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00576 98 247 Receptor kinase-like Gene Family AT1G56120 26.667 9.17e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00576 PK_Tyr_Ser-Thr 7.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00576 - - gmx:100798233 1653.26