LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00575	ATGGGACGGATGTTACATGGTTTGGCTTGTGCACTTGTTGTTTTGTTGTTCTGTCATTTCAGTTGCTTCGTTAGCTTTGCACAAGTTCAATCTGCGAACGCCACCACTGACCCTTCTGAAGCAAGAGTTATAAATTCAATATTTAGCAGATGGCGTATATATGCAAACACAACTGTATGGAATATAAGCGGCGAAGTTTGCAGTGGAAGTGCCATTGACAATACCTCCACCGCTGAAAGTTACAATCCATTCATCAGATGTGATCGTTCCTTTAACGCTGGAACTACTTGTCACATCACATCACTGAGGGTCTATGCACTTGACGTGTCTGGTGAAATTCCTGAAGAGCTATGGACTCTCACATATCTCACAAATTTAAATTTGGGGCAAAATTTCTTGTCGGGTTCTCTACCTCCGGCCATTGGAAATCTAACTCGTATGCAATACTTGTCTCTTGGCATCAATAATCTTACAGGGGAGCTCCCAAAGGAATTAGGAAATCTTTCACAATTAATTGTATTGAGTTTTTCGACAAACAGATTTTCAGGATCTCTTCCATTAGAACTTGGGAACCTGACAAAGTTAGAACAACTGTACTTTGATAGTTCAGGAATCAGTGGTCCAATTCCTTCCACATTTGAAAATCTTAAAAATTTGGTGGCAGTATGGGCTTCAGACATGGAATTTGGAGGCCAAATACCAGACTTTATAGGGAATTGGACTAAGCTTCAAGTCTTGAGGCTTCAAGGAAATTCTTTTAATGGCTCAATACCTTCATCATTTTCCAAGTTGACTTCTTTGATAGAGTTGAGAATAAGTGACATCTCCAATGGAAGCTCCTCACTACAATTTATAAGAAATATGAAATCTTTAGATACATTGGTACTAAGGAATAACAATATTTTTGGTTCAATTCCATCATTCATTGGAGAATTTCATAATTTGACTCAATTGGATCTAAGCTTTAACAACATCTCAGGACAAATTCCAGAATCAACTTTCAATTTGAGTTCACTCTCTTATGTGTTTCTTGGAAATAACATGCTTAGTGGCTCTTTGCCTCGGCAAAAAAGTTCATCTCTTCAAAATATAGATTTGTCATACAATAATCTGTCAAACAACCTTCCGTCATGGGTAAATGAACCAAATTTACAGTTGAATTTAGTTGCCAACAACTTCACAATAGAAGGTTCAAATATAAGTGGCTTGCCTTCTGGTCTCAATTGTCTTCAGAAAAGTTTTCCTTGCAATAGTGGTGTTGGAAGATATTATGAGTTTGCAATAAAGTGTGGTGGACCACAAACTATATCGACAGATGGAACTGTGTATGAAGCGGACAAGGCTACACTTGGTGCTGCTACATACTTTGTTACAGACACAAATAGATGGGCTGTTAGTAATGTTGGAATTTACACAGGGAGCAATAATCCTACCAACGAAATCCCTGTGTCCTCAGACATCTTCCAAGCAGCACAATCAGCACGACACTCTCCTTCATCATTAAGATACTATGGTTTGGGGTTGCAAAATGGCTTTTACAACATCACCCTTTCATTTGCAGAAACGACCATTTTGAGTAATACTCGCACATGGAGAAGCCTAGGGAGGCGAGTCTTCGATATATATATTCAGGGAACACTTGTTCTTGAGGATTTTGACATAGTAAAGAAAACTGAGGAAACTGGGGGTTCCTCGTACACAGACCAATTTAGGTTTGAAGTTTTCCAAAATTATCTTGAGATCCATCTCTTTTGGGCTGGAAAAGGGACCTGTTGCATACCAGCTCAAGGCACTTATGGGCCCTTGATTCAAGCCATTCTTGTTAAACCAGATTTCCCACCTATTGTCAACAACGGACCTACAAGTAGTAAAAAGGACAGTACTGGTCTTATTGTTGGAATTGTTGTGGCTGCAGTTATAAGCTTTCTATCAATTTTTGTGTTTTTCTATATCATTCGTAGAAGAAATCGGCAAAATGATGATGAAGATCTTTTAGGAATTGATACAAAGCCATACACTTTTACCTATTCTGAGTTAAAGAATGCCACAAATGACTTCAGTCTCGAAAACAAACTTGGCGAGGGAGGTTTTGGACCTGTTCATAAGGGAACACTAAATGATGGAAGAGTTATTGCTGTGAAACGACTATCAATAGGATCCAATCAAGGAAAGAGTCAATTTGTGAATGAGATTGCTACCATATCAGCTGTGCAACATCGTAATCTAGTCAAATTATATGGGTGTTGCATTCAGGGGAGAGAAAAACTTATTGTATATGAGTATCTAGCAAATAAGAGTCTTGATAAGGCATTATTCGGAAATCGTTTAACACTTGATTGGTCGACACGGTATGATATTTGCTTGGGTGTTGCCAGAGGTTTAACTTATTTACATGAAGAATCACGTCTCAGAATCATACATCGTGATGTGAAGGCTAGTAACATTTTACTTGACAATGAGCTTGTTCCAAAAATATCAGATTTTGGTTTGGCCAAATTGTATGATGATAAAATGACCCATATGAGCACTCGTGTGGCTGGCACAATTGGATATCTTGCACCAGAGTATGCCATGCGTGGACACCTCACAGAGAAAGCAGATGTGTTTTCATTTGGTATTGTGGCTCTAGAGATAGTGAGTGGAAGGCCAAATTCTTATTCAAGTACGGAAGAAGAGAAGGTGTACCTTCTTGAATGGGCATGGCAACTTCATGAAAGCAACCGCATAAGTGATCTAGTGGATCCTAGACTGGTCGAATTTGATGAGGAAGAAGTAAAACGAATAGTAGGAATAGTGCTTTTGTGCACTCAGGCATCACCAACATTACGTCCATCAATGTCACGTGCTGTGGCAATGCTTTCAGGAGATATTGAAGTGAATATTGTCACTACAAAGCCTGGTTACCTAACTGATTGGGATTTTGAAGACGTGACCAGCTTCATGACTACTAACATAACAACTAAAGGATCGTATACAAGTTGTGAGAATTCACCATCAAGTACCACCACACTCGGGAGAGTTGACCGGTCACCAATAAGTGCTTCTAAACCCATCCTTTATAATTAG	3066	0.3904	MGRMLHGLACALVVLLFCHFSCFVSFAQVQSANATTDPSEARVINSIFSRWRIYANTTVWNISGEVCSGSAIDNTSTAESYNPFIRCDRSFNAGTTCHITSLRVYALDVSGEIPEELWTLTYLTNLNLGQNFLSGSLPPAIGNLTRMQYLSLGINNLTGELPKELGNLSQLIVLSFSTNRFSGSLPLELGNLTKLEQLYFDSSGISGPIPSTFENLKNLVAVWASDMEFGGQIPDFIGNWTKLQVLRLQGNSFNGSIPSSFSKLTSLIELRISDISNGSSSLQFIRNMKSLDTLVLRNNNIFGSIPSFIGEFHNLTQLDLSFNNISGQIPESTFNLSSLSYVFLGNNMLSGSLPRQKSSSLQNIDLSYNNLSNNLPSWVNEPNLQLNLVANNFTIEGSNISGLPSGLNCLQKSFPCNSGVGRYYEFAIKCGGPQTISTDGTVYEADKATLGAATYFVTDTNRWAVSNVGIYTGSNNPTNEIPVSSDIFQAAQSARHSPSSLRYYGLGLQNGFYNITLSFAETTILSNTRTWRSLGRRVFDIYIQGTLVLEDFDIVKKTEETGGSSYTDQFRFEVFQNYLEIHLFWAGKGTCCIPAQGTYGPLIQAILVKPDFPPIVNNGPTSSKKDSTGLIVGIVVAAVISFLSIFVFFYIIRRRNRQNDDEDLLGIDTKPYTFTYSELKNATNDFSLENKLGEGGFGPVHKGTLNDGRVIAVKRLSIGSNQGKSQFVNEIATISAVQHRNLVKLYGCCIQGREKLIVYEYLANKSLDKALFGNRLTLDWSTRYDICLGVARGLTYLHEESRLRIIHRDVKASNILLDNELVPKISDFGLAKLYDDKMTHMSTRVAGTIGYLAPEYAMRGHLTEKADVFSFGIVALEIVSGRPNSYSSTEEEKVYLLEWAWQLHESNRISDLVDPRLVEFDEEEVKRIVGIVLLCTQASPTLRPSMSRAVAMLSGDIEVNIVTTKPGYLTDWDFEDVTSFMTTNITTKGSYTSCENSPSSTTTLGRVDRSPISASKPILYN	1021

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00575	1021	Gene3D	Phosphorylase Kinase; domain 1	649	761	-	-
	Viun11g00575	1021	ProSiteProfiles	Protein kinase domain profile.	686	959	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00575	1021	ProSiteProfiles	Leucine-rich repeat profile.	314	336	IPR001611	GO:0005515
	Viun11g00575	1021	FunFam	Leucine-rich repeat receptor-like protein kinase	655	761	-	-
	Viun11g00575	1021	Gene3D	Transferase(Phosphotransferase) domain 1	762	964	-	-
	Viun11g00575	1021	Gene3D	-	423	610	-	-
	Viun11g00575	1021	Gene3D	Ribonuclease Inhibitor	38	278	IPR032675	-
	Viun11g00575	1021	Pfam	Malectin domain	425	606	IPR021720	-
	Viun11g00575	1021	CDD	STKc_IRAK	692	953	-	-
	Viun11g00575	1021	SUPERFAMILY	Protein kinase-like (PK-like)	666	953	IPR011009	-
	Viun11g00575	1021	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	278	401	-	-
	Viun11g00575	1021	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	19	986	-	-
	Viun11g00575	1021	FunFam	Os05g0263100 protein	41	277	-	-
	Viun11g00575	1021	SUPERFAMILY	L domain-like	96	405	-	-
	Viun11g00575	1021	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	762	965	-	-
	Viun11g00575	1021	Gene3D	Ribonuclease Inhibitor	279	402	IPR032675	-
	Viun11g00575	1021	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	805	817	IPR008271	GO:0004672\|GO:0006468
	Viun11g00575	1021	SMART	serkin_6	686	953	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00575	1021	Pfam	Protein tyrosine and serine/threonine kinase	687	951	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00575	Viun-Chr11	6231662	6269098	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00575	147	988	Receptor kinase-like Gene Family	AT1G56120	60.890	0.0	1041

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00575		PK_Tyr_Ser-Thr	2.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00575	-		-	gmx:100798233	1448.72