Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00572 ATGGGTCGTCGGAAAATTGAGATTGTGAGAGTGAAGAACCCCAACAGGAGACAAATAACGTTTTCAAAGCGTCGAACAGGGTTGTTCAAGAAAGCGAATGAGTTGTCCATCATGTGTGGTGCAAAGATTGCCATTGTCGTGTTCTCTCCGGGGAACAAACCCTACTCGTTTTCCCACCCAGGAGTTCATGTTGTTGCTACTGAATTTCTTCAGCAAGATCTCAGATCAAACCAACTCCAAAGAGGACCCTCTTTTGATGTTTATAGGAATCACCACTTCAATCTGCAACTTCTCGATGTGATGAGACAGTTGGCTGAGGAAGAAAGTAAAAGTTCAATGCTTGATGAAGCTATCGATCATGGCAGAGGGACCCAACTCTCTGAACTTCGAAAATTTCACACTTCTCTTTCTGATATCAATTCAAAAGTTAAAAGTGAGATCGAGGCTGCAGAAACCATGATACTCTTGTCACAGGAAGGAGTAGAATTTCCTGTTACAACAAGAAACGAGAATATAAGTGACAAATTTCTGTGA 534 0.4176 MGRRKIEIVRVKNPNRRQITFSKRRTGLFKKANELSIMCGAKIAIVVFSPGNKPYSFSHPGVHVVATEFLQQDLRSNQLQRGPSFDVYRNHHFNLQLLDVMRQLAEEESKSSMLDEAIDHGRGTQLSELRKFHTSLSDINSKVKSEIEAAETMILLSQEGVEFPVTTRNENISDKFL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00572 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun11g00572 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun11g00572 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun11g00572 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun11g00572 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun11g00572 177 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Viun11g00572 177 CDD MADS 2 60 - -
Viun11g00572 177 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Viun11g00572 177 PANTHER MADS BOX PROTEIN 3 144 - -
Viun11g00572 177 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Viun11g00572 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00572 Viun-Chr11 6055174 6055707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00572 1 116 Type I MADS-box Gene Family AT2G24840 42.500 4.54e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun11g00572 SRF-TF 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00572 - - gmx:100791127 163.31