LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00569	ATGGTGAAACCCTCCAATCCTCCATTTGACGCTATGCCATCTCTCAAGTGCAAGGTTTACTCTGATATCTCTGAAAGTGCTCCTTTTCTTGTTATTGATGATAACAAGAGAATCCATTTGTTACCAGTTGTGCTCTTACACGAAGAAGCTCCTGATACCGGCAATATAAATTCCTGGGCAGAAGTTCCACATGCAACTGTTGATTTTAAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTCAGGTTTGTCCAGATTATATCCAGCTTCAGATTAATGGAGAGATTGTAGGAGAAAAGTCGTTGTGTTCTTTATTAAATGAAAAATCTGGTTCAAGTGATTTGAAGAAACTGACGTTGGCAAATGTTGGTGGAGATGGAAATAGTGTACAGGGTTATGTGCACAATTTTGAAATATTTCCTAGTATTTCTTCTGTTAAGGATTACCATTTAAAGGACCCTCCTCTGAAGTTATCAATTGATGAATCCTCAGTCTCTGAGATTGAAGAAGAAAGTGATGGTGTTTGGGCTGTTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTATGGATGTTGTTCTATCAGATGCTTTCGGACAGCCTGTAGATAAGGAGAACGAGGTTTTTGCTTCACTTTTGTATGCCGATACTAGAGTTCCAGTGGAGAATACAACTGATGATGAAGCACCCCTTTTAGCTAGTTATGATGGAATTGAATTTTCTTCTCATGAAAGACCAAGTAAACTTTTGCTGGGTCGTGCCTCGTTTAAGCTCAAAATATCTCAGCTTTCATCCAAGTGTGATAATAGGTTCTTCCTCATCAGATTTTGTGTTCCGAAATTAGGGAATTATCCTTTTCTTGAGACATACTCCCATCCAATTCGATGCATATCCAGAAGCCGTAACACAAGATTGTCCACTCTGGTATGGAAAAGGTCAACTGTTCTTAATTTCTCTAGTGTATCTCAATCTTCAGCTTTGGATGATGGGTCCTTGGAACTTCAGCATTCAGGTCATGAAGCACAAGCCAATCCACTAGTGAAGCGGTTTAGAATTGGTCAAGACAAAACACCTGTGTCAGTGAAGACTGACCCCACCTTTGAGCAACCTGATGAAGAATGTAACTCTCATGTCCAGAATGCTACCCAGGTTGAAAATGAATTTCCAAGAAGCTTCGATGGAAGGCCGGCTAACTTCAATGAAGCATATGATTCTCCATCTGATTCAGAGAGTATCGGGGAGGGAAATTCACCTTTAAATAGTATGGCAAGTAAAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTTGCGAGCTTGGCTGAGAAATCTCTCATACTTAAGGAAATTACAACCTCTGCTCCTGACAAAGAAATTTTAGAATTGGCGAATCATGTGTCACACTATTCAGGATGTTCGCATCATGGAAACCAAATATTAATTGCCAAGAGATTGATAAGCCATGGAAGAAATCTCTGGAAGGAGATGTCTCTAAACAATCACCACATTCCTTGGGAGAATGGAGTGTATGATATTCAAAAGCATTTCAAGATGATTGCTTGTTGCGGTTCAAGGTCTCTGTCACCTCAGGATCTAAATCTTCTGAGAAAGATCGCTGGATCTCAAGAGTACCTAACACAAGAGAACTTCGAGAAGTTATGGTGTTGGTTGTACCCTGTGGCAATTACAATATCAAGGGAGTGGATAAATCCTATCTGGAAATCCACATCACCTAAATGGATCGAAGGGTTTATAACCAAGGAGGAAGCTGAAGCTTCACTACAAGGTCCCACAGGATTTCAAGAACCTGGTACCTTTGTACTCCGGTTTCCTACCTCACGAAGCTGGCCACACCCAGATGCTGGTAGCTTAGTTGTAACCTATGTTGGCAATGACTACAAACTGCACCACAGGCTACTTTCTTTGCACCAGGCTTATGGATCTTATAACAATGGCGATAAAAGAGTTGACGTGAAACCGCTTCAAGATATGCTATTGGCAGAACCTGAGCTGTCTCAATTGGGAAGGATAATAAGAAGTCATTAG	2055	0.4068	MVKPSNPPFDAMPSLKCKVYSDISESAPFLVIDDNKRIHLLPVVLLHEEAPDTGNINSWAEVPHATVDFKFPLEKWVHVGCQVCPDYIQLQINGEIVGEKSLCSLLNEKSGSSDLKKLTLANVGGDGNSVQGYVHNFEIFPSISSVKDYHLKDPPLKLSIDESSVSEIEEESDGVWAVVGGKASCRRNFSMDVVLSDAFGQPVDKENEVFASLLYADTRVPVENTTDDEAPLLASYDGIEFSSHERPSKLLLGRASFKLKISQLSSKCDNRFFLIRFCVPKLGNYPFLETYSHPIRCISRSRNTRLSTLVWKRSTVLNFSSVSQSSALDDGSLELQHSGHEAQANPLVKRFRIGQDKTPVSVKTDPTFEQPDEECNSHVQNATQVENEFPRSFDGRPANFNEAYDSPSDSESIGEGNSPLNSMASKRYPISDMTIFKYCLASLAEKSLILKEITTSAPDKEILELANHVSHYSGCSHHGNQILIAKRLISHGRNLWKEMSLNNHHIPWENGVYDIQKHFKMIACCGSRSLSPQDLNLLRKIAGSQEYLTQENFEKLWCWLYPVAITISREWINPIWKSTSPKWIEGFITKEEAEASLQGPTGFQEPGTFVLRFPTSRSWPHPDAGSLVVTYVGNDYKLHHRLLSLHQAYGSYNNGDKRVDVKPLQDMLLAEPELSQLGRIIRSH	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00569	684	SUPERFAMILY	SH2 domain	579	647	IPR036860	-
	Viun11g00569	684	PANTHER	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION	23	675	IPR001217	GO:0003700\|GO:0006355\|GO:0007165
	Viun11g00569	684	Gene3D	SH2 domain	569	680	IPR036860	-
	Viun11g00569	684	ProSiteProfiles	Src homology 2 (SH2) domain profile.	583	684	IPR000980	-
	Viun11g00569	684	MobiDBLite	consensus disorder prediction	403	420	-	-
	Viun11g00569	684	MobiDBLite	consensus disorder prediction	400	420	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00569	Viun-Chr11	5989185	5997622	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	STAT	Viun11g00569		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00569	-		-	gmx:100803169	1146.72