Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00568 ATGGACAGTGATTCTGTGGGAAGCCAAGAGTACTCTCTACTCAAGGATTTAAGACTCCAAATTGAACCAAAGGACGGAACTTTCTCTCTCTGCTTTTGGCTTTATTTCACCACTTCCTCTACATTCCCCTCTACCATTATTCAGCAGGTTTACTCTGATATCTCTGAAAGTGCTCCTTTTCTTGTTATTGATGATAACAAGAGAATCCATTTGTTACCAGTTGTGCTCTTACACGAAGAAGCTCCTGATACCGGCAATATAAATTCCTGGGCAGAAGTTCCACATGCAACTGTTGATTTTAAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTCAGGTTTGTCCAGATTATATCCAGCTTCAGATTAATGGAGAGATTGTAGGAGAAAAGTCGTTGTGTTCTTTATTAAATGAAAAATCTGGTTCAAGTGATTTGAAGAAACTGACGTTGGCAAATGTTGGTGGAGATGGAAATAGTGTACAGGGTTATGTGCACAATTTTGAAATATTTCCTAGTATTTCTTCTGTTAAGGATTACCATTTAAAGGACCCTCCTCTGAAGTTATCAATTGATGAATCCTCAGTCTCTGAGATTGAAGAAGAAAGTGATGGTGTTTGGGCTGTTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTATGGATGTTGTTCTATCAGATGCTTTCGGACAGCCTGTAGATAAGGAGAACGAGGTTTTTGCTTCACTTTTGTATGCCGATACTAGAGTTCCAGTGGAGAATACAACTGATGATGAAGCACCCCTTTTAGCTAGTTATGATGGAATTGAATTTTCTTCTCATGAAAGACCAAGTAAACTTTTGCTGGGTCGTGCCTCGTTTAAGCTCAAAATATCTCAGCTTTCATCCAAGTGTGATAATAGGTTCTTCCTCATCAGATTTTGTGTTCCGAAATTAGGGAATTATCCTTTTCTTGAGACATACTCCCATCCAATTCGATGCATATCCAGAAGCCGTAACACAAGATTGTCCACTCTGCATTCAGGTCATGAAGCACAAGCCAATCCACTAGTGAAGCGGTTTAGAATTGGTCAAGACAAAACACCTGTGTCAGTGAAGACTGACCCCACCTTTGAGCAACCTGATGAAGAATGTAACTCTCATGTCCAGAATGCTACCCAGGTTGAAAATGAATTTCCAAGAAGCTTCGATGGAAGGCCGGCTAACTTCAATGAAGCATATGATTCTCCATCTGATTCAGAGAGTATCGGGGAGGGAAATTCACCTTTAAATAGTATGGCAAGTAAAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTTGCGAGCTTGGCTGAGAAATCTCTCATACTTAAGGAAATTACAACCTCTGCTCCTGACAAAGAAATTTTAGAATTGGCGAATCATGTGTCACACTATTCAGGATGTTCGCATCATGGAAACCAAATATTAATTGCCAAGAGATTGATAAGCCATGGAAGAAATCTCTGGAAGGAGATGTCTCTAAACAATCACCACATTCCTTGGGAGAATGGAGTGTATGATATTCAAAAGCATTTCAAGATGATTGCTTGTTGCGGTTCAAGGTCTCTGTCACCTCAGGATCTAAATCTTCTGAGAAAGATCGCTGGATCTCAAGAGTACCTAACACAAGAGAACTTCGAGAAGTTATGGTGTTGGTTGTACCCTGTGGCAATTACAATATCAAGGGAGTGGATAAATCCTATCTGGAAATCCACATCACCTAAATGGATCGAAGGGTTTATAACCAAGGAGGAAGCTGAAGCTTCACTACAAGGTCCCACAGGATTTCAAGAACCTGGTACCTTTGTACTCCGGTTTCCTACCTCACGAAGCTGGCCACACCCAGATGCTGGTAGCTTAGTTGTAACCTATGTTGGCAATGACTACAAACTGCACCACAGGCTACTTTCTTTGCACCAGGCTTATGGATCTTATAACAATGGCGATAAAAGAGTTGACGTGAAACCGCTTCAAGATATGCTATTGGCAGAACCTGAGCTGTCTCAATTGGGAAGGATAATAAGAAGTCATTAG 2067 0.4069 MDSDSVGSQEYSLLKDLRLQIEPKDGTFSLCFWLYFTTSSTFPSTIIQQVYSDISESAPFLVIDDNKRIHLLPVVLLHEEAPDTGNINSWAEVPHATVDFKFPLEKWVHVGCQVCPDYIQLQINGEIVGEKSLCSLLNEKSGSSDLKKLTLANVGGDGNSVQGYVHNFEIFPSISSVKDYHLKDPPLKLSIDESSVSEIEEESDGVWAVVGGKASCRRNFSMDVVLSDAFGQPVDKENEVFASLLYADTRVPVENTTDDEAPLLASYDGIEFSSHERPSKLLLGRASFKLKISQLSSKCDNRFFLIRFCVPKLGNYPFLETYSHPIRCISRSRNTRLSTLHSGHEAQANPLVKRFRIGQDKTPVSVKTDPTFEQPDEECNSHVQNATQVENEFPRSFDGRPANFNEAYDSPSDSESIGEGNSPLNSMASKRYPISDMTIFKYCLASLAEKSLILKEITTSAPDKEILELANHVSHYSGCSHHGNQILIAKRLISHGRNLWKEMSLNNHHIPWENGVYDIQKHFKMIACCGSRSLSPQDLNLLRKIAGSQEYLTQENFEKLWCWLYPVAITISREWINPIWKSTSPKWIEGFITKEEAEASLQGPTGFQEPGTFVLRFPTSRSWPHPDAGSLVVTYVGNDYKLHHRLLSLHQAYGSYNNGDKRVDVKPLQDMLLAEPELSQLGRIIRSH 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00568 688 ProSiteProfiles Src homology 2 (SH2) domain profile. 587 688 IPR000980 -
Viun11g00568 688 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 6 679 IPR001217 GO:0003700|GO:0006355|GO:0007165
Viun11g00568 688 Gene3D SH2 domain 573 684 IPR036860 -
Viun11g00568 688 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 173 IPR013320 -
Viun11g00568 688 SUPERFAMILY SH2 domain 583 651 IPR036860 -
Viun11g00568 688 MobiDBLite consensus disorder prediction 407 424 - -
Viun11g00568 688 MobiDBLite consensus disorder prediction 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00568 Viun-Chr11 5989185 5998084 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Viun11g00568 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00568 - - gmx:100803169 1167.91