Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00567 ATGGACAGTGATTCTGTGGGAAGCCAAGAGTACTCTCTACTCAAGGATTTAAGACTCCAAATTGAACCAAAGGACGGAACTTTCTCTCTCTGCTTTTGGCTTTATTTCACCACTTCCTCTACATTCCCCTCTACCATTATTCAGCAGGTTTACTCTGATATCTCTGAAAGTGCTCCTTTTCTTGTTATTGATGATAACAAGAGAATCCATTTGTTACCAGTTGTGCTCTTACACGAAGAAGCTCCTGATACCGGCAATATAAATTCCTGGGCAGAAGTTCCACATGCAACTGTTGATTTTAAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTCAGGTTTGTCCAGATTATATCCAGCTTCAGATTAATGGAGAGATTGTAGGAGAAAAGTCGTTGTGTTCTTTATTAAATGAAAAATCTGGTTCAAGTGATTTGAAGAAACTGACGTTGGCAAATGTTGGTGGAGATGGAAATAGTGTACAGGGTTATGTGCACAATTTTGAAATATTTCCTAGTATTTCTTCTGTTAAGGATTACCATTTAAAGGACCCTCCTCTGAAGTTATCAATTGATGAATCCTCAGTCTCTGAGATTGAAGAAGAAAGTGATGGTGTTTGGGCTGTTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTATGGATGTTGTTCTATCAGATGCTTTCGGACAGCCTGTAGATAAGGAGAACGAGGTTTTTGCTTCACTTTTGTATGCCGATACTAGAGTTCCAGTGGAGAATACAACTGATGATGAAGCACCCCTTTTAGCTAGTTATGATGGAATTGAATTTTCTTCTCATGAAAGACCAAGTAAACTTTTGCTGGGTCGTGCCTCGTTTAAGCTCAAAATATCTCAGCTTTCATCCAAGTGTGATAATAGGTTCTTCCTCATCAGATTTTGTGTTCCGAAATTAGGGAATTATCCTTTTCTTGAGACATACTCCCATCCAATTCGATGCATATCCAGAAGCCGTAACACAAGATTGTCCACTCTGGTATGGAAAAGGTCAACTGTTCTTAATTTCTCTAGTGTATCTCAATCTTCAGCTTTGGATGATGGGTCCTTGGAACTTCAGCATTCAGGTCATGAAGCACAAGCCAATCCACTAGTGAAGCGGTTTAGAATTGGTCAAGACAAAACACCTGTGTCAGTGAAGACTGACCCCACCTTTGAGCAACCTGATGAAGAATGTAACTCTCATGTCCAGAATGCTACCCAGGTTGAAAATGAATTTCCAAGAAGCTTCGATGGAAGGCCGGCTAACTTCAATGAAGCATATGATTCTCCATCTGATTCAGAGAGTATCGGGGAGGGAAATTCACCTTTAAATAGTATGGCAAGTAAAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTTGCGAGCTTGGCTGAGAAATCTCTCATACTTAAGGAAATTACAACCTCTGCTCCTGACAAAGAAATTTTAGAATTGGCGAATCATGTGTCACACTATTCAGGATGTTCGCATCATGGAAACCAAATATTAATTGCCAAGAGATTGATAAGCCATGGAAGAAATCTCTGGAAGGAGATGTCTCTAAACAATCACCACATTCCTTGGGAGAATGGAGTGTATGATATTCAAAAGCATTTCAAGATGATTGCTTGTTGCGGTTCAAGGTCTCTGTCACCTCAGGATCTAAATCTTCTGAGAAAGATCGCTGGATCTCAAGAGTACCTAACACAAGAGAACTTCGAGAAGTTATGGTGTTGGTTGTACCCTGTGGCAATTACAATATCAAGGGAGTGGATAAATCCTATCTGGAAATCCACATCACCTAAATGGATCGAAGGGTTTATAACCAAGGAGGAAGCTGAAGCTTCACTACAAGGTCCCACAGGATTTCAAGAACCTGGTACCTTTGTACTCCGGTTTCCTACCTCACGAAGCTGGCCACACCCAGATGCTGGTAGCTTAGTTGTAACCTATGTTGGCAATGACTACAAACTGCACCACAGGCTACTTTCTTTGCACCAGGCTTATGGATCTTATAACAATGGCGATAAAAGAGTTGACGTGAAACCGCTTCAAGATATGCTATTGGCAGAACCTGAGCTGTCTCAATTGGGAAGGATAATAAGAAGTCATTAG 2148 0.4064 MDSDSVGSQEYSLLKDLRLQIEPKDGTFSLCFWLYFTTSSTFPSTIIQQVYSDISESAPFLVIDDNKRIHLLPVVLLHEEAPDTGNINSWAEVPHATVDFKFPLEKWVHVGCQVCPDYIQLQINGEIVGEKSLCSLLNEKSGSSDLKKLTLANVGGDGNSVQGYVHNFEIFPSISSVKDYHLKDPPLKLSIDESSVSEIEEESDGVWAVVGGKASCRRNFSMDVVLSDAFGQPVDKENEVFASLLYADTRVPVENTTDDEAPLLASYDGIEFSSHERPSKLLLGRASFKLKISQLSSKCDNRFFLIRFCVPKLGNYPFLETYSHPIRCISRSRNTRLSTLVWKRSTVLNFSSVSQSSALDDGSLELQHSGHEAQANPLVKRFRIGQDKTPVSVKTDPTFEQPDEECNSHVQNATQVENEFPRSFDGRPANFNEAYDSPSDSESIGEGNSPLNSMASKRYPISDMTIFKYCLASLAEKSLILKEITTSAPDKEILELANHVSHYSGCSHHGNQILIAKRLISHGRNLWKEMSLNNHHIPWENGVYDIQKHFKMIACCGSRSLSPQDLNLLRKIAGSQEYLTQENFEKLWCWLYPVAITISREWINPIWKSTSPKWIEGFITKEEAEASLQGPTGFQEPGTFVLRFPTSRSWPHPDAGSLVVTYVGNDYKLHHRLLSLHQAYGSYNNGDKRVDVKPLQDMLLAEPELSQLGRIIRSH 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00567 715 SUPERFAMILY SH2 domain 610 678 IPR036860 -
Viun11g00567 715 Gene3D SH2 domain 600 711 IPR036860 -
Viun11g00567 715 ProSiteProfiles Src homology 2 (SH2) domain profile. 614 715 IPR000980 -
Viun11g00567 715 MobiDBLite consensus disorder prediction 431 452 - -
Viun11g00567 715 MobiDBLite consensus disorder prediction 434 452 - -
Viun11g00567 715 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 6 706 IPR001217 GO:0003700|GO:0006355|GO:0007165
Viun11g00567 715 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 173 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00567 Viun-Chr11 5989185 5998085 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Viun11g00567 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00567 - - gmx:100803169 1218.37