Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00561 ATGAAAGATGGTGGCAGAAAACAAGGTGCAATGTCACCATGTGCAGCATGCAAGCTTCTTCGAAGGAGATGTGCACAGGATTGTGTGTTTGCTCCTTATTTTCCTGCAGATGAGCCACACAAGTTTGCCAGTGTTCACAAGGTTTTTGGAGCTAGCAATGTCAACAAAATGTTACAGGAACTACCAGAGTACCAACGAAGTGATGCTGTTAGTTCAATGGTATACGAAGCGAATGCAAGGGTGAGGGATCCAGTGTATGGATGTGTGGGAGCCATATCTTCTCTGCAGCAACAAGTTGATGTGTTACAAACCCAGTTGGCACTTGCACAAGCAGAGGTTGTGCACATGAAACTGAGCCAAGTTTCAACTTCCTTTGAACAACTCAAAGCACTTCCTGCACCATCCAATTCATCCTCAGAGAACTTGTCTCCATCCAGTAAACTTGCCAAAACCCTTTTTGCCATGGACATGGTCGTTGATCAGCCAAACATGGGAGAGTCTCTGTGGTCATGTTAG 516 0.4535 MKDGGRKQGAMSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMKLSQVSTSFEQLKALPAPSNSSSENLSPSSKLAKTLFAMDMVVDQPNMGESLWSC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00561 171 Coils Coil 92 112 - -
Viun11g00561 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 137 - -
Viun11g00561 171 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Viun11g00561 171 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00561 Viun-Chr11 5868894 5873493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00561 1 171 AS2 family AT1G31320 68.571 2.54e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun11g00561 LOB 3.6e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00561 - - ccaj:109811748 265.774