Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00548 ATGACACTAGTTCACGTTCTTTTAGTCTTTCCATATTTGAAGCATGCTGTCAGGCATAAGCTACAGAAGGTGCTTGCTTTCGTGTGCTTGTGGCTGTGGTGGAGTACTTATATTCATGTTGAGGCAGCAAACGACAGTTTAAAGCCTGGTGATACGATGAATTACACAGATACAGCAACACTATGTTCAAAATTGGGCAAGTATTGTCTAACTTTTACTTCGGTTTCTAGTGGTGACAACAATTACTTGGTTATCTTCAATAGAAATAAGAATATTGAAGTATGGATGAGTGATGGAAACCAACCCGTTGACAGGGATTCTGCAGTTCTGTCACTTAACCGTTCAGGGGTGCTGAGAATTGAATCTCAAGGTGGGAACCCAATAATCTTGTATTCTCCACCTCAACCTATCAACAACACTAAGGCCACCTTGTTGGACACAGGAAACTTTGTGCTTCAACAACTTCACCCCAATGGGACTAACACTCTCTTGTGGCAGAGTTTTGATGATCCCACAGACACTATGATCCCCACCAAAAAGTTAGGTGTTAATCACAAAACAGGCCATCATTGGTTACTGGTTTCGTGGTTCACCAAAACACTTGCCCCTCCCGGTGCCTTTAGCCTTGAATGGGAGCCAGGGGAACAAGAATTGATCATAAGGAGACGGGGAAAAGTCTGTTGGCGAAGTGGGAAACTGAGAAACAATAAATTTGAGCACATTTCAGAGAAAGCACAGCGGGGTTTGAAGTACACCATTGTGTCTAATGGGGATGAAAATTCTCTCTCTTTCACAACTACAAATGAAGAGCACGATATATGGTGGGTGATATCAGAGATTGGGGAGATATATGATGATGAAGGATATATTGGAGGTGCTGATTTGTGCTATGGATATAACTACACTGATGGAGGGTGCCAAAGGTGGCAGGATATACCCAAGTGTAGGAATCCTGGTGACGTGTTTCAGAAAAATATTGGTGACTTCAGTTATAGCAATGTAAGCTTTGAGGAAAATCCAAGTTACGGTCACAGTGATTGTGAGGCCAGTTGCTGGAGCGACTGTACTTGTAGTGGTTTCAAGGAATTTTATCAAAATGGAACTGGATGTGTGTTCTTTCATTGGATTTCATCGGAAAATTATACTTCTCACAGTACTGGTGACACCTTTTACGTGCTGGTGAACACCTTAACTCATCATAAGGGTACAAAAAAGTGGAGATGGATAGCTGCAGTAGCAGCAACTGCTCTACTTGCGATTTGTCTAATCACTATTTGCCTATTCTTAAAGAAACGGAAATATGTGTTTCAAGAGGAGAAAAGTCAAAGGATGGTGATGAAGTTGGTACATTTGGCAACTTGTAGTGCGTCATCTGCAATGGAAGATTTTGAAGATGATTTAAAAAAGGGACATGGCCTAACAGTGTTTAGTTATACATCAGTTAAGGAAGCAACAAATGGATTTTCATCCGAGAATAAGTTGGGACAAGGAGGCTTTGGACCCGTTTATAAGGGAATTCTTTCGACAGGGCAAGAGATTGCTGTAAAAAGACTTTCAAAAACTTCTGGACAAGGAATTGTTGAGTTTAAGAATGAACTGACACTAATATGTGAACTTCAGCATATGAATCTTGTACAACTACTTGGTTGTTGCATTCATGAAGAAGAGAGGATTCTAATTTACGAGTATATGCCAAATCAAAGTTTGGATTTCTATCTATTTGATTGTAGAAGAGGAAAATTACTAGATTGGAAGAAGCGCTTCAAAATAATAGAAGGAATTTCTCAAGGATTACTTTATCTTCATAAGTACTCAAGACTCAAAGTCATTCACAGGGACATGAAAGCTAGCAACATTCTTTTAGATGAAAACATGAATCCAAAAATTTCAGATTTTGGGATGGCCAGAATATTCACACAACAAGAATCAGCCTCAAATACCAACAGAATTGTTGGCACACATGGTTACATGTCTCCGGAATATATGATGGAAGGAGCTTTCTCCACAAAGTCTGATGTTTATAGTTTTGGAGTTATGTTACTTGAAATTGTTAGTGGAAGAAGAAACCTTGGTTGCTATGATGTTGATCGACCATTAAATCTAATAGGATATACGTGGGAGTTATGGAAAGATGGTGCATGTTCAGAGTTAGTGGATCCATCAATAAAGGAGTCGATTGATGCTGATGAAGTACAAAGATGCATTCATATTGGTCTGTTGTGTGTAGAACATTATGCAGATGATCGACCCACCATGTCTGATGTTGTATCAATGTTGACAAACAAAAGTGCAATAGTTTCCTTACCTCAAACACCAGCATTCTACGTTGGAAGAAGGATCCTTCATGATAATTTATCTTCAAAAGGGTCTTGGATAGATTCTGCTGGAGAAATTACAGCCTCTACAATCGAGATGACTGATTCCTAA 2427 0.3943 MTLVHVLLVFPYLKHAVRHKLQKVLAFVCLWLWWSTYIHVEAANDSLKPGDTMNYTDTATLCSKLGKYCLTFTSVSSGDNNYLVIFNRNKNIEVWMSDGNQPVDRDSAVLSLNRSGVLRIESQGGNPIILYSPPQPINNTKATLLDTGNFVLQQLHPNGTNTLLWQSFDDPTDTMIPTKKLGVNHKTGHHWLLVSWFTKTLAPPGAFSLEWEPGEQELIIRRRGKVCWRSGKLRNNKFEHISEKAQRGLKYTIVSNGDENSLSFTTTNEEHDIWWVISEIGEIYDDEGYIGGADLCYGYNYTDGGCQRWQDIPKCRNPGDVFQKNIGDFSYSNVSFEENPSYGHSDCEASCWSDCTCSGFKEFYQNGTGCVFFHWISSENYTSHSTGDTFYVLVNTLTHHKGTKKWRWIAAVAATALLAICLITICLFLKKRKYVFQEEKSQRMVMKLVHLATCSASSAMEDFEDDLKKGHGLTVFSYTSVKEATNGFSSENKLGQGGFGPVYKGILSTGQEIAVKRLSKTSGQGIVEFKNELTLICELQHMNLVQLLGCCIHEEERILIYEYMPNQSLDFYLFDCRRGKLLDWKKRFKIIEGISQGLLYLHKYSRLKVIHRDMKASNILLDENMNPKISDFGMARIFTQQESASNTNRIVGTHGYMSPEYMMEGAFSTKSDVYSFGVMLLEIVSGRRNLGCYDVDRPLNLIGYTWELWKDGACSELVDPSIKESIDADEVQRCIHIGLLCVEHYADDRPTMSDVVSMLTNKSAIVSLPQTPAFYVGRRILHDNLSSKGSWIDSAGEITASTIEMTDS 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00548 808 Gene3D Transferase(Phosphotransferase) domain 1 564 768 - -
Viun11g00548 808 SMART serkin_6 488 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00548 808 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 145 784 - -
Viun11g00548 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 93 198 IPR036426 -
Viun11g00548 808 Pfam D-mannose binding lectin 94 196 IPR001480 -
Viun11g00548 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 564 767 - -
Viun11g00548 808 SMART blect_4 44 171 IPR001480 -
Viun11g00548 808 SUPERFAMILY Protein kinase-like (PK-like) 473 779 IPR011009 -
Viun11g00548 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Viun11g00548 808 Gene3D - 37 168 IPR036426 -
Viun11g00548 808 Gene3D Phosphorylase Kinase; domain 1 449 563 - -
Viun11g00548 808 Pfam Protein tyrosine and serine/threonine kinase 491 758 IPR001245 GO:0004672|GO:0006468
Viun11g00548 808 ProSiteProfiles Protein kinase domain profile. 488 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00548 808 PIRSF SRK 294 807 IPR024171 GO:0004674
Viun11g00548 808 PIRSF SRK 16 283 IPR024171 GO:0004674
Viun11g00548 808 ProSiteProfiles Bulb-type lectin domain profile. 44 165 IPR001480 -
Viun11g00548 808 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 453 563 - -
Viun11g00548 808 CDD STKc_IRAK 494 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00548 Viun-Chr11 5619653 5623167 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00548 465 775 Receptor kinase-like Gene Family AT3G45860 56.869 5.21e-123 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00548 PK_Tyr_Ser-Thr 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00548 - - vun:114168194 1385.16