LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00547	ATGACCCTTCTTCACGTTTTCTTAGTCTCTCCATATTTGAAGCATCCTATCAGGCATAAACTACAGAATCTGCTTGCTTTCATGTACTTGTGGTTGTGGTGGAGTACTCGTATTCATATTCAAGCAGCAAATGACAGTTTAAATCCTGGTGATACACTAAATTACACAGCAACACTATGTTCAGAAAAGTGCACATATTATCTAGCTTTTACTTCATTTAGTCCTGGTGATAACAATTACTTGGCTGTATTGACTGCAAAAAATGATATTGAAGTTTGGATGAGTGATAGAAACCAACTTGTTGACCAGGATTCTGCAGTTCTATCACTTGACCACTATGGTGTGCTGAAAATAGGACCTCAACGTGTGAAGCCAATAATCCTGTATTCTCCACCAAAACCTATCAACAACACTAAGGCCACCTTGTTGGACACAGGAAACTTTGTGCTTCAACAACTTCACCCCAATGGGACTAACACTCTCTTGTGGCAGACTTTTGATTACCCCACTGACATTTTGATCCCCACCATGAAGTTAGGTGTTAATCACAAAACAGGCCATCGTTGGTTACTGGTTTCATGGATTACCAAAACACTTGCCCCTCCGGGTGCCTTTACCCTTGAATGGGAACATGTGGAACAAGAATTGATCATAAGGAGACGGGGAAAAGTTTGCTGGCGAAGTGGGAAACTGAGGAACAATAGATTTGAGCACATTTCAGAGGATGCACAAAGCGGGTTGAAGTACACCCTTGTGTCTAACGGGGACGAAAACTCCTTCTCTTTCACAACTACAAATGAAGAGCCTGATCGATGGTGGTCGTTATCAGATATTGGGCAGATATCTGATGGTGAAGGATATGTTGCAAGGGCTGATTTGTGTTATGGATATAACAACACTGATGGAGGGTGCCAAAGATGGCAGGATATACCCAAGTGTAGGAATCCCGGTGACGTGTTTCAGAAAAATATTGGTTACTTCAGTACTAACAATTTAAGCGTTGAGGAAAATACAAGTTACGTTCACAGTGATTGTGAGGCCAGTTGCTGGAGCAATTGTACCTGTAGTGCTTTCAAGGAATTATATCCAAATGGAACTGGATGTGTATTCTTTCATTGGATTTCAGCGGAAAATTATACTTTTGACAGTACTGGTGGCCCCTTTTACTTGCTGGTGAACACGTTGTCTCATCATAAGGGGACAAAAAAGTGGATTTGGACAGGTGCAGTAGCAGCAACTGCTCTATTTGCAATTTGCCTATTCACTATTTGCCTAGTCTTAAAGAAGCGAAAATATGTGTTTCAAGAGAAGAAAAGTCAAAGGATAGTGATGAAGATGGTTCATCTGGCAACTTGTAGTCGGTCTTCTCCAACGGAAGATTTTGAAGTTGTTTTAAAAGAGGGGCATGGTCTAAGAGTGTTTAATTATACATCAGTTATGGCAGCAACAAATGGATTTTCAACGGAGAATAAGTTAGGACAAGGAGGCTTTGGACCTGTTTATAAGGGAATTCTTCCAACAGGACAAGAGATTGCTGTGAAAAGACTTTCAAAAACTTCTGGACAGGGAATTGTGGAGTTTAAGAATGAACTGACACTGATATGTGAACTTCAGCATATGAATCTTGTACAACTACTCGGTTGTTGCATTCATGAAGAAGAGAGGATTCTAATTTACGAGTATATGCCAAATAAAAGTTTGGATTTCTATCTATTCGATTGTACAAGACGGAAATTACTAGATTGGAAGAAGCGCTTCAAAATAATAGAAGGAATTTCTCAAGGATTACTTTATCTTCATAAGTACTCAAGACTCAAAGTCATTCACAGGGACATGAAAGCTAGCAACATTCTTTTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGGATGGCCAGAATATTCACACAACAAGAATCAGCCTCAAATACCAACAGAATTGTTGGCACACATGGTTACATGTCTCCGGAATATATGATGGAAGGAGCTTTCTCTACAAAGTCTGATGTTTTTAGTTTTGGAGTTTTGTTACTTGAAATTGTTAGTGGAAGAAGAAACCTTGGTTGCTATGATGTTGATCGCCCATTAAATCTAATAGGACATACATGGGAGTTATGGAAAGATGGTGCATGTTTAGAGTTAGTGGATCCATCAATAAAGGAGTCGATTGATGCTGATGAAGTACAAAGATGCATTCATATTGGTCTGTTGTGTGTAGAACATTATGCAGATGATCGACCAACCATGTCTGACGTTGTATCAATGTTGACAAACAAAAGTGCAATAGTTTCCTTACCTCAAACACCAGCATTCTACATCGGCAGAAAGATCCTTCATGATAATTTATCTTCAAAGGGGTCTTGTACTGATTCTACATCAGAAATTACAGCTTCTACAATGGACACGACTGATTCCTATTTAATAGAATCAAGACCGAGGCCATGCATTTTACATGCAGAATTCCAAAGCTTAAGTTGA	2481	0.3914	MTLLHVFLVSPYLKHPIRHKLQNLLAFMYLWLWWSTRIHIQAANDSLNPGDTLNYTATLCSEKCTYYLAFTSFSPGDNNYLAVLTAKNDIEVWMSDRNQLVDQDSAVLSLDHYGVLKIGPQRVKPIILYSPPKPINNTKATLLDTGNFVLQQLHPNGTNTLLWQTFDYPTDILIPTMKLGVNHKTGHRWLLVSWITKTLAPPGAFTLEWEHVEQELIIRRRGKVCWRSGKLRNNRFEHISEDAQSGLKYTLVSNGDENSFSFTTTNEEPDRWWSLSDIGQISDGEGYVARADLCYGYNNTDGGCQRWQDIPKCRNPGDVFQKNIGYFSTNNLSVEENTSYVHSDCEASCWSNCTCSAFKELYPNGTGCVFFHWISAENYTFDSTGGPFYLLVNTLSHHKGTKKWIWTGAVAATALFAICLFTICLVLKKRKYVFQEKKSQRIVMKMVHLATCSRSSPTEDFEVVLKEGHGLRVFNYTSVMAATNGFSTENKLGQGGFGPVYKGILPTGQEIAVKRLSKTSGQGIVEFKNELTLICELQHMNLVQLLGCCIHEEERILIYEYMPNKSLDFYLFDCTRRKLLDWKKRFKIIEGISQGLLYLHKYSRLKVIHRDMKASNILLDENMIPKISDFGMARIFTQQESASNTNRIVGTHGYMSPEYMMEGAFSTKSDVFSFGVLLLEIVSGRRNLGCYDVDRPLNLIGHTWELWKDGACLELVDPSIKESIDADEVQRCIHIGLLCVEHYADDRPTMSDVVSMLTNKSAIVSLPQTPAFYIGRKILHDNLSSKGSCTDSTSEITASTMDTTDSYLIESRPRPCILHAEFQSLS	826

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00547	826	SMART	blect_4	50	169	IPR001480	-
	Viun11g00547	826	PIRSF	SRK	17	282	IPR024171	GO:0004674
	Viun11g00547	826	PIRSF	SRK	285	807	IPR024171	GO:0004674
	Viun11g00547	826	Gene3D	-	38	166	IPR036426	-
	Viun11g00547	826	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	562	765	-	-
	Viun11g00547	826	SMART	serkin_6	486	764	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00547	826	Gene3D	Phosphorylase Kinase; domain 1	446	561	-	-
	Viun11g00547	826	Pfam	D-mannose binding lectin	92	194	IPR001480	-
	Viun11g00547	826	Pfam	Protein tyrosine and serine/threonine kinase	488	757	IPR001245	GO:0004672\|GO:0006468
	Viun11g00547	826	Pfam	PAN-like domain	317	371	IPR003609	-
	Viun11g00547	826	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	451	561	-	-
	Viun11g00547	826	CDD	STKc_IRAK	492	759	-	-
	Viun11g00547	826	ProSiteProfiles	Protein kinase domain profile.	486	772	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00547	826	ProSiteProfiles	Bulb-type lectin domain profile.	44	163	IPR001480	-
	Viun11g00547	826	SUPERFAMILY	Protein kinase-like (PK-like)	470	779	IPR011009	-
	Viun11g00547	826	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	607	619	IPR008271	GO:0004672\|GO:0006468
	Viun11g00547	826	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	143	788	-	-
	Viun11g00547	826	Gene3D	Transferase(Phosphotransferase) domain 1	562	766	-	-
	Viun11g00547	826	SUPERFAMILY	alpha-D-mannose-specific plant lectins	92	196	IPR036426	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00547	Viun-Chr11	5601543	5605265	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00547	474	814	Receptor kinase-like Gene Family	AT3G45860	54.227	1.73e-125	390

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00547		PK_Tyr_Ser-Thr	1.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00547	-		-	vun:114168194	1706.81