LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00546	ATGACCCTTCTTCACGTTTTCTCATCATGCAGCTTAGTCTCTCCATATTTGAAGCATCCTATCAGGCATAAACTACAGAATCTGCTTGCTTTCATGTACTTGTGGTTGTGGTGGAGTACTCGTATTCATATTCAAGCAGCAAATGACAGTTTAAATCCTGGTGATACACTAAATTACACAGCAACACTATGTTCAGAAAAGTGCACATATTATCTAGCTTTTACTTCATTTAGTCCTGGTGATAACAATTACTTGGCTGTATTGACTGCAAAAAATGATATTGAAGTTTGGATGAGTGATAGAAACCAACTTGTTGACCAGGATTCTGCAGTTCTATCACTTGACCACTATGGTGTGCTGAAAATAGGACCTCAACGTGTGAAGCCAATAATCCTGTATTCTCCACCAAAACCTATCAACAACACTAAGGCCACCTTGTTGGACACAGGAAACTTTGTGCTTCAACAACTTCACCCCAATGGGACTAACACTCTCTTGTGGCAGACTTTTGATTACCCCACTGACATTTTGATCCCCACCATGAAGTTAGGTGTTAATCACAAAACAGGCCATCGTTGGTTACTGGTTTCATGGATTACCAAAACACTTGCCCCTCCGGGTGCCTTTACCCTTGAATGGGAACATGTGGAACAAGAATTGATCATAAGGAGACGGGGAAAAGTTTGCTGGCGAAGTGGGAAACTGAGGAACAATAGATTTGAGCACATTTCAGAGGATGCACAAAGCGGGTTGAAGTACACCCTTGTGTCTAACGGGGACGAAAACTCCTTCTCTTTCACAACTACAAATGAAGAGCCTGATCGATGGTGGTCGTTATCAGATATTGGGCAGATATCTGATGGTGAAGGATATGTTGCAAGGGCTGATTTGTGTTATGGATATAACAACACTGATGGAGGGTGCCAAAGATGGCAGGATATACCCAAGTGTAGGAATCCCGGTGACGTGTTTCAGAAAAATATTGGTTACTTCAGTACTAACAATTTAAGCGTTGAGGAAAATACAAGTTACGTTCACAGTGATTGTGAGGCCAGTTGCTGGAGCAATTGTACCTGTAGTGCTTTCAAGGAATTATATCCAAATGGAACTGGATGTGTATTCTTTCATTGGATTTCAGCGGAAAATTATACTTTTGACAGTACTGGTGGCCCCTTTTACTTGCTGGTGAACACGTTGTCTCATCATAAGGGGACAAAAAAGTGGATTTGGACAGGTGCAGTAGCAGCAACTGCTCTATTTGCAATTTGCCTATTCACTATTTGCCTAGTCTTAAAGAAGCGAAAATATGTGTTTCAAGAGAAGAAAAGTCAAAGGATAGTGATGAAGATGGTTCATCTGGCAACTTGTAGTCGGTCTTCTCCAACGGAAGATTTTGAAGTTGTTTTAAAAGAGGGGCATGGTCTAAGAGTGTTTAATTATACATCAGTTATGGCAGCAACAAATGGATTTTCAACGGAGAATAAGTTAGGACAAGGAGGCTTTGGACCTGTTTATAAGGGAATTCTTCCAACAGGACAAGAGATTGCTGTGAAAAGACTTTCAAAAACTTCTGGACAGGGAATTGTGGAGTTTAAGAATGAACTGACACTGATATGTGAACTTCAGCATATGAATCTTGTACAACTACTCGGTTGTTGCATTCATGAAGAAGAGAGGATTCTAATTTACGAGTATATGCCAAATAAAAGTTTGGATTTCTATCTATTCGATTGTACAAGACGGAAATTACTAGATTGGAAGAAGCGCTTCAAAATAATAGAAGGAATTTCTCAAGGATTACTTTATCTTCATAAGTACTCAAGACTCAAAGTCATTCACAGGGACATGAAAGCTAGCAACATTCTTTTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGGATGGCCAGAATATTCACACAACAAGAATCAGCCTCAAATACCAACAGAATTGTTGGCACACATGGTTACATGTCTCCGGAATATATGATGGAAGGAGCTTTCTCTACAAAGTCTGATGTTTTTAGTTTTGGAGTTTTGTTACTTGAAATTGTTAGTGGAAGAAGAAACCTTGGTTGCTATGATGTTGATCGCCCATTAAATCTAATAGGACATACATGGGAGTTATGGAAAGATGGTGCATGTTTAGAGTTAGTGGATCCATCAATAAAGGAGTCGATTGATGCTGATGAAGTACAAAGATGCATTCATATTGGTCTGTTGTGTGTAGAACATTATGCAGATGATCGACCAACCATGTCTGACGTTGTATCAATGTTGACAAACAAAAGTGCAATAGTTTCCTTACCTCAAACACCAGCATTCTACATCGGCAGAAAGATCCTTCATGATAATTTATCTTCAAAGGGGTCTTGTACTGATTCTACATCAGAAATTACAGCTTCTACAATGGACACGACTGATTCCTATTTAATAGAATCAAGACCGAGGCCATGCATTTTACATGCAGAATTCCAAAGCTTAAGTTGA	2493	0.3919	MTLLHVFSSCSLVSPYLKHPIRHKLQNLLAFMYLWLWWSTRIHIQAANDSLNPGDTLNYTATLCSEKCTYYLAFTSFSPGDNNYLAVLTAKNDIEVWMSDRNQLVDQDSAVLSLDHYGVLKIGPQRVKPIILYSPPKPINNTKATLLDTGNFVLQQLHPNGTNTLLWQTFDYPTDILIPTMKLGVNHKTGHRWLLVSWITKTLAPPGAFTLEWEHVEQELIIRRRGKVCWRSGKLRNNRFEHISEDAQSGLKYTLVSNGDENSFSFTTTNEEPDRWWSLSDIGQISDGEGYVARADLCYGYNNTDGGCQRWQDIPKCRNPGDVFQKNIGYFSTNNLSVEENTSYVHSDCEASCWSNCTCSAFKELYPNGTGCVFFHWISAENYTFDSTGGPFYLLVNTLSHHKGTKKWIWTGAVAATALFAICLFTICLVLKKRKYVFQEKKSQRIVMKMVHLATCSRSSPTEDFEVVLKEGHGLRVFNYTSVMAATNGFSTENKLGQGGFGPVYKGILPTGQEIAVKRLSKTSGQGIVEFKNELTLICELQHMNLVQLLGCCIHEEERILIYEYMPNKSLDFYLFDCTRRKLLDWKKRFKIIEGISQGLLYLHKYSRLKVIHRDMKASNILLDENMIPKISDFGMARIFTQQESASNTNRIVGTHGYMSPEYMMEGAFSTKSDVFSFGVLLLEIVSGRRNLGCYDVDRPLNLIGHTWELWKDGACLELVDPSIKESIDADEVQRCIHIGLLCVEHYADDRPTMSDVVSMLTNKSAIVSLPQTPAFYIGRKILHDNLSSKGSCTDSTSEITASTMDTTDSYLIESRPRPCILHAEFQSLS	830

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00546	830	Pfam	Protein tyrosine and serine/threonine kinase	492	761	IPR001245	GO:0004672\|GO:0006468
	Viun11g00546	830	ProSiteProfiles	Bulb-type lectin domain profile.	48	167	IPR001480	-
	Viun11g00546	830	Gene3D	-	42	170	IPR036426	-
	Viun11g00546	830	ProSiteProfiles	Protein kinase domain profile.	490	776	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00546	830	Gene3D	Transferase(Phosphotransferase) domain 1	566	770	-	-
	Viun11g00546	830	SMART	blect_4	54	173	IPR001480	-
	Viun11g00546	830	PIRSF	SRK	21	286	IPR024171	GO:0004674
	Viun11g00546	830	PIRSF	SRK	289	811	IPR024171	GO:0004674
	Viun11g00546	830	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	566	769	-	-
	Viun11g00546	830	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	611	623	IPR008271	GO:0004672\|GO:0006468
	Viun11g00546	830	CDD	STKc_IRAK	496	763	-	-
	Viun11g00546	830	SUPERFAMILY	Protein kinase-like (PK-like)	474	783	IPR011009	-
	Viun11g00546	830	Gene3D	Phosphorylase Kinase; domain 1	450	565	-	-
	Viun11g00546	830	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	146	792	-	-
	Viun11g00546	830	Pfam	D-mannose binding lectin	96	198	IPR001480	-
	Viun11g00546	830	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	455	565	-	-
	Viun11g00546	830	SMART	serkin_6	490	768	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00546	830	Pfam	PAN-like domain	321	375	IPR003609	-
	Viun11g00546	830	SUPERFAMILY	alpha-D-mannose-specific plant lectins	96	200	IPR036426	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00546	Viun-Chr11	5601517	5605265	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00546	478	818	Receptor kinase-like Gene Family	AT3G45860	54.227	2.38e-125	390

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00546		PK_Tyr_Ser-Thr	1.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00546	-		-	vun:114168194	1720.67