Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00545 ATGGCGATGAAATTATCTCTAATCGAAGATTTTGGAAATGATTTCAAAAAGGGACACGGTTTAAAAATATTAGATTATCCGTTGGTTGTGGCGGCCACAAATGGATTTTCATCTGAAAATAAGTTAGGACAGGGGGGTTTTGGACCAGTTTATAAGGAAACTTTGCCAACGGGAGAGGAGGTTGCTATAAAAAGACTTTCAAAAAGTTCTGCACAAGGAATTGTGGAGTTCAAAAATGAAGTAACACTTATATGTGAGCTTCAGCACATGAATCTTGTTCAACTACTTGGTTGCTGCATTCATGAAGAAGAGAAGATTCTAATTTACGAGTATATGCCCAACAAAAGCTTGGATTTCTATCTTTTCGATTGTTCAAGAAGCAAATTACTAGATTGGAACAAGCGTTTCAACATAATACAAGGAATTGCTCAAGGATTATTGTATCTGCACAAGTACTCAAGACTCAAAGTCATTCACAGAGACTTGAAAACCAGTAACATACTTCTTGATGAGAACATGAATCCCAAAATTTCAGATTTTGGAATGGCCAGAATGTTTACTCAACAAGACTCAATATCAAATACGAACAGGGTTGTTGGGACATACGGTTATATGTCTCCAGAATATGCTATGGAAGGAATTTTTTCTACAAAGTCAGATGTGTACAGCTTTGGAGTGTTGTTGCTTGAAATAGTTAGTGGACGAAAAAACACTGGTTTTTTTTATGATGATGACCACCCAATAAATCTAATTGGGCATGTATGGGAATTATGGAAAGATGAAAAGTGTTTTGAATCAGTGGATCCATCATTAGAGGAGTCATTTGATTATGATGAAGTGCAGAGGTGTATTCATGTTGGTCTCCTATGTGCTGAACATTATGCAAATGATCGACCTACAATGTCTGACGTTATATCAATGTTGACAAACAAGAGTGCAATAGTGTCTTTGCCTTCAAGACCAGCATTCTATATTCAAAGAAATATGTTTAACGAGAATTTATCTTCTTTAGAGTTGTGTACTGCTTCCACAATAAAAACTACTACTTCATTGGAGATAGAATAA 1065 0.3568 MAMKLSLIEDFGNDFKKGHGLKILDYPLVVAATNGFSSENKLGQGGFGPVYKETLPTGEEVAIKRLSKSSAQGIVEFKNEVTLICELQHMNLVQLLGCCIHEEEKILIYEYMPNKSLDFYLFDCSRSKLLDWNKRFNIIQGIAQGLLYLHKYSRLKVIHRDLKTSNILLDENMNPKISDFGMARMFTQQDSISNTNRVVGTYGYMSPEYAMEGIFSTKSDVYSFGVLLLEIVSGRKNTGFFYDDDHPINLIGHVWELWKDEKCFESVDPSLEESFDYDEVQRCIHVGLLCAEHYANDRPTMSDVISMLTNKSAIVSLPSRPAFYIQRNMFNENLSSLELCTASTIKTTTSLEIE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00545 354 Gene3D Transferase(Phosphotransferase) domain 1 112 317 - -
Viun11g00545 354 SMART serkin_6 36 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00545 354 Pfam Protein tyrosine and serine/threonine kinase 39 306 IPR001245 GO:0004672|GO:0006468
Viun11g00545 354 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 4 111 - -
Viun11g00545 354 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 343 - -
Viun11g00545 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Viun11g00545 354 ProSiteProfiles Protein kinase domain profile. 36 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00545 354 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 112 316 - -
Viun11g00545 354 CDD STKc_IRAK 42 310 - -
Viun11g00545 354 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Viun11g00545 354 SUPERFAMILY Protein kinase-like (PK-like) 22 332 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00545 Viun-Chr11 5561455 5563206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00545 24 331 Receptor kinase-like Gene Family AT4G11480 56.818 7.67e-125 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00545 PK_Tyr_Ser-Thr 7.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00545 - - vun:114169229 649.432