LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00544	ATGAGGCTTATCCTACACAAACTACTGTTCGCTTCCATGCACTTGTGGTTGTGCTGGAGTTCTTCCACTCATGTTCATGCATCAGATGACAGTTTAAAGCCCGGTGAAACACTGAATTCCTCTTCACTACAACCATTATATTCGAAGGGTCGCAAATATTTTCTACGATTTTATACCACTGTAATTGGTAGTGAAATTTTTACATACTTAGCAATACAAAGTGCATACGACTATGCTACAGTTTGGGAGGGTAATAGAGGACAACCAATCCACCATCGTGACGCAGTTCTGTCCTTAGACTTCTCTGGCGTGCTTAAAATAGAATACGAATCTGCGAAAAAACCAATTATTCTGTATTCTCCTCCTCAACCTATCAACAACACTGTGGCCACTTTGCTGGACACAGGTAACTTGGTGCTTCAACAACTTCACACCAATGGGACAAACACTCTTTTGTGGCAGAGTTTTGATTCTCCCACCGACACTTTGCTCCCCACCATGAAGTTAGGTGTTGTTGATCACAAAACAGGCCTTCGTCGGTTACTTGTTTCTCGGTTGACCAATGCGATTGCGTCTCCAGGAGCCTTTAGTCTTGAATGGGAACCGACGGCGAAAGAACTGATGATAAGGAGACGAGGAAAAGTTTGTTGGAAGAGTGGGAAAATGAAGAACAATAGATTTGAGAACATTCCAGAAGATGCACAAGGCGTGTTGAAGTACACCGTAGTGTCTAATGGGGAAGAAGACACCTTCTCTTTTACATCGACTAATGAAAACATTAGACGTTGGTGGTCCCTGTCGGATACCGGACGGTTATCCTATAATAAAAATGAAGGGTATGTTGCAAGGGCTGATCTGTGTTATGGATACAACAACACAGAAGGAGGGTGCCAAAGATGGCAGGATATACCTAAGTGTAGGAGTGCTGGTGATGTGTTTATTAAAAAGAGTCTTCGCCGTAATTACCAAAATCAAACCATTGATGACAATCAGAATATTAGTCACAGTGATTGTGAGGCTGCTTGCTGGAGCGATTGCAATTGCAATGGATTCACAGAAATCTATCTCGATGGAACTGGATGTAGATTCTATCATTGGAATTCATCCAAAGATTATATAGTTGATGGCACTGTTTCGGGTTTTGACTTTTACATACTGGAGAACAAAGGGAACATAACCCCTCATCATCATCACGGTACAAAAAGGTGGATATGGATAAGTACAGTAATAGCATCTACTTTACTCATAATATGCGCATCCATTCAATTCCTAGCCATAATGATACGGAAACATGTGCTTCAAGAGAAGAAAAGGAGAGAAATGAAATCATCTCTAATCGAAGATTTTAGAAATGATTTCAAAAAGGGAAACGGTTTAAAAGTATTCGATTATACGTTGGTTGAGGCGGCCACAAATGGATTTTCATCTGAAAACAAGTTAGGACAAGGAGGTTTTGGACCAGTTTATAAGGGAACTTTGCCAACAGGAGAGGAGGTTGCTATAAAAAGACTTTCAAGAAGTTCTGCACAAGGAATTGTGGAGTTTAAAAACGAACTGACACTCATATGTGAACTTCAGCACATGAATCTTGTTCAACTACTTGGTTGCTGCATTCATGAAGAAGAGAAGATTCTAATTTACGAGTATATGCCTAATAAAAGCTTGGATTTCTATCTTTTCGATTGTACAAGAAGCAAATTATTGGATTGGAATAAGCGGTTCAACATAATACAAGGAATTGCTCAAGGATTATTGTACCTTCACAAGTACTCAAGACTCAAAGTCATTCATAGAGACTTGAAAGCTAGTAACATACTTCTTGATGAGAACATGAATCCCAAAATTTCAGATTTTGGAATGGCCAGAATGTTTACTCAACAAGACTCAATATCAAATACGAATAGGATTGTTGGGACATATGGTTATATGTCTCCAGAATATGCTACGCAAGGAGTTTTTTCTACAAAGTCTGATATATACAGCTTTGGAGTGTTGCTGCTTGAAATAGTTAGTGGGCGAAAAAACACTAGTTTTTATGATGATGACCGCCCAATAAATCTTATTGGACATGTATGGGAATTATGGAAAGATGGCAAGTGTTTTGAATCAGTGGATCCATCATTAGAGGAGTCATTTGATTCTGATGAAGTGCAGAGGTGTATTCATATTGGTCTCTTATGTGTTGAACATTATGCAAATGATCGACCTACAATGCCTGACATAATATCAATGTTAACAAACAAGAGTGCAATAATGTCTTCACCTAAAAGACCAGCATTCTATGTTCAAAGAGAGATGCTTAACCAGAATTTATCTTCTGCAGAGTTGTGTACGACTTCTACAGTAGAAATTACTACTTCGTTGGAAATAGAATAA	2376	0.3885	MRLILHKLLFASMHLWLCWSSSTHVHASDDSLKPGETLNSSSLQPLYSKGRKYFLRFYTTVIGSEIFTYLAIQSAYDYATVWEGNRGQPIHHRDAVLSLDFSGVLKIEYESAKKPIILYSPPQPINNTVATLLDTGNLVLQQLHTNGTNTLLWQSFDSPTDTLLPTMKLGVVDHKTGLRRLLVSRLTNAIASPGAFSLEWEPTAKELMIRRRGKVCWKSGKMKNNRFENIPEDAQGVLKYTVVSNGEEDTFSFTSTNENIRRWWSLSDTGRLSYNKNEGYVARADLCYGYNNTEGGCQRWQDIPKCRSAGDVFIKKSLRRNYQNQTIDDNQNISHSDCEAACWSDCNCNGFTEIYLDGTGCRFYHWNSSKDYIVDGTVSGFDFYILENKGNITPHHHHGTKRWIWISTVIASTLLIICASIQFLAIMIRKHVLQEKKRREMKSSLIEDFRNDFKKGNGLKVFDYTLVEAATNGFSSENKLGQGGFGPVYKGTLPTGEEVAIKRLSRSSAQGIVEFKNELTLICELQHMNLVQLLGCCIHEEEKILIYEYMPNKSLDFYLFDCTRSKLLDWNKRFNIIQGIAQGLLYLHKYSRLKVIHRDLKASNILLDENMNPKISDFGMARMFTQQDSISNTNRIVGTYGYMSPEYATQGVFSTKSDIYSFGVLLLEIVSGRKNTSFYDDDRPINLIGHVWELWKDGKCFESVDPSLEESFDSDEVQRCIHIGLLCVEHYANDRPTMPDIISMLTNKSAIMSSPKRPAFYVQREMLNQNLSSAELCTTSTVEITTSLEIE	791

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00544	791	ProSiteProfiles	Bulb-type lectin domain profile.	23	153	IPR001480	-
	Viun11g00544	791	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	208	780	-	-
	Viun11g00544	791	Pfam	D-mannose binding lectin	80	185	IPR001480	-
	Viun11g00544	791	ProSiteProfiles	Protein kinase domain profile.	474	760	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00544	791	Gene3D	Transferase(Phosphotransferase) domain 1	550	759	-	-
	Viun11g00544	791	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	550	753	-	-
	Viun11g00544	791	CDD	STKc_IRAK	480	747	-	-
	Viun11g00544	791	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	439	549	-	-
	Viun11g00544	791	Pfam	Protein tyrosine and serine/threonine kinase	477	742	IPR001245	GO:0004672\|GO:0006468
	Viun11g00544	791	SUPERFAMILY	alpha-D-mannose-specific plant lectins	80	171	IPR036426	-
	Viun11g00544	791	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	595	607	IPR008271	GO:0004672\|GO:0006468
	Viun11g00544	791	Gene3D	Phosphorylase Kinase; domain 1	430	549	-	-
	Viun11g00544	791	SUPERFAMILY	Protein kinase-like (PK-like)	459	767	IPR011009	-
	Viun11g00544	791	Gene3D	-	22	157	IPR036426	-
	Viun11g00544	791	PIRSF	SRK	278	790	IPR024171	GO:0004674
	Viun11g00544	791	PIRSF	SRK	1	287	IPR024171	GO:0004674
	Viun11g00544	791	Pfam	PAN-like domain	306	365	IPR003609	-
	Viun11g00544	791	SMART	blect_4	37	159	IPR001480	-
	Viun11g00544	791	SMART	serkin_6	474	752	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00544	Viun-Chr11	5543206	5546574	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00544	436	789	Receptor kinase-like Gene Family	AT4G11480	53.652	8.35e-126	389

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00544		PK_Tyr_Ser-Thr	1.1e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00544	-		-	vun:114168194	1047.34