Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00542 ATGGGGGTGAAATTATCTCTAATCGACGATTTTCGAAATGATTTGAAAAAGGGACACGGTTTAAAAGTATTCGATTATACGTTGGTTATGGCAGCCACAAATGGATTCTCACATGAAAACAAGTTAGGACAGGGAGGTTTTGGACCAGTTTATAAGGGAACCTTACCAACAGAGGAGTTTGCCGTAAAAAGACTTTCAAGAAGTTCTGCACAAGGAATTGTGGAGTTCAAAAATGAACTAACACTTATATGCGAACTTCAGCACATGAATCTTGTTCAACTACTTGGTTGTTGCATTCATGAAGAAGAGAAGATTCTGATTTACGAGTATATACCCAATAAAAGCTTGGATTTCTATCTTTTCGAGTGTACAAGAAGCAAATTACTAGATTGGAATAAGCGGTTCAACATAATACAACGAATTGCTCAAGGATTATTGTATCTTCACAAGTATTCGGGACTCAAAGTGATACACAGAGACTTGAAAACTAGTAACATACTTCTTGATGAGAACATGAATCCAAAAATTTTAGATTTTGGAATGGCTAGAATGTTTACCCAACAAGACTCCATATCAAATACGAACAGAGTTGTTGGGACATATCGTTATATGTCTCCAGAATATGCTATGGAAGGAGTTTTCTCGACAAAGTCTGATGTATATAGCTTTGGAGTGTTGTTGCTTGAAATAGTCAGTGGACGGAAAAACACCAGCTTTTATGATCATGACCACCCAATAAATCTAGTTGGACATGTATGGGAATTATGGAAAGATGACAAGTGTGTTGAATCAGTGGATCCATCATTAATGGAGTCATTAGATTCTGATGATGTGCAGAGGTGTATTCATGCCGGTCTTCTATGTGTTGAACATTATGCAAATGATAGACCTACAATGTCTGATGTTATATCAATGTTGACAAACAAGAGTGAAAGAGTGTCTTTACCTAAAAGACCAGCATTCTATGTTCAAAGAGAGATGCTTAACGAAAATTTATCATCTCTGCAGAATTGTGTACTGCTTCTACAGTAG 1032 0.3653 MGVKLSLIDDFRNDLKKGHGLKVFDYTLVMAATNGFSHENKLGQGGFGPVYKGTLPTEEFAVKRLSRSSAQGIVEFKNELTLICELQHMNLVQLLGCCIHEEEKILIYEYIPNKSLDFYLFECTRSKLLDWNKRFNIIQRIAQGLLYLHKYSGLKVIHRDLKTSNILLDENMNPKILDFGMARMFTQQDSISNTNRVVGTYRYMSPEYAMEGVFSTKSDVYSFGVLLLEIVSGRKNTSFYDHDHPINLVGHVWELWKDDKCVESVDPSLMESLDSDDVQRCIHAGLLCVEHYANDRPTMSDVISMLTNKSERVSLPKRPAFYVQREMLNENLSSLQNCVLLLQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00542 343 Gene3D Transferase(Phosphotransferase) domain 1 111 320 - -
Viun11g00542 343 Gene3D Phosphorylase Kinase; domain 1 10 110 - -
Viun11g00542 343 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 328 - -
Viun11g00542 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Viun11g00542 343 FunFam Uncharacterized protein 11 110 - -
Viun11g00542 343 PIRSF ILK 10 318 - -
Viun11g00542 343 Pfam Protein tyrosine and serine/threonine kinase 38 281 IPR001245 GO:0004672|GO:0006468
Viun11g00542 343 SUPERFAMILY Protein kinase-like (PK-like) 20 306 IPR011009 -
Viun11g00542 343 ProSiteProfiles Protein kinase domain profile. 36 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00542 343 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 111 314 - -
Viun11g00542 343 SMART serkin_6 36 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00542 Viun-Chr11 5509655 5513547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00542 13 324 Receptor kinase-like Gene Family AT4G11480 56.051 3.65e-121 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00542 PK_Tyr_Ser-Thr 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00542 - - vun:114169229 629.402