LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00541	ATGAGGCTTATCCTACACAAACTACTGCTTGCTTTCATGCACTTGTGGTTGTGCTGGAGTTCTTCCACTCATGTTCATGCAGCAGATGACAGTTTAAAGCCAGGTGAAACGCTGAAATATTCTTCACCATCACTATATTCCAAGAGTCGCAAATATTTTCTGGAATTTTTTAGTGTGAGTGAAGCTCTTACTTACTTAGCAATACGAAGTGAAGATGAGATAGTTTGGGAGGGTAATAGAGAACAACCTGTGAATCAGAGTGACGTGGTTCTCTCCCTAAACTTCTCAGGGTTTCTGAAAATAGAATCTGGATCTCTGAAAAAACCAATTATTCTGTATTCTCCTCCTCAACCTATCAACAACACTGTGGCTACTTTGTTGGACACAGGGAACTTTGTGCTTCAACACCTTCACCCCAATGGGACAAACATTCTTCTGTGGCAGAGTTTTGATTACCCCACTGAAACTTTGGTCCCCACCATGAAGTTAGGTGTTAATCACAAAACAGGCCACCGTTGGTTACTTATTTCACAGATCACCATTGAGCTTGCGACCCCAGGGGCCTTTAGTCTTGAATGGGAACCGACGGAACAAGAATTGATAATAAGAAGACGAGCAAAAGTTTGTTGGAAAAGTGGGAAACTGAGGAACAATAGATTTGAGAACATCCCAGGAGATGCACAAGTAGTGTTGATCTACACCATAGTGTCGAATGAAGAAGAAGACAGCTTCTCTTTCACATCTACAAATGAAAACCTTACACGTTGGTGGTCCCTTTCGGATACTGGGATGTTATCTTACAATAATAAAAAGCGATATGTTGCAAGGGCTGATCTGTGTTATGGATATGACACAGAAGCAGGGTGCCAAAGATGGCAGGATATACCTAAGTGCAGGAGTCCTGGTGATGTGTTCACCAAAAAGACTCTACGCCTTAATTACCAAAAGCAAACCTATGATGACAATCAGAATATTAGTCACAGTGATTGTGAGGCTGCTTGCTGGAGCGATTGTAATTGCAATGCATTTGCAGAATATTTTGATGATGATACTGGATGTACTTTCTATATTTGGAATTCATCCAAAGATATTATAGTTGAAGACAGTGTTTATGGTCAAGAAGTTTACATACTGGAGAACAAAGGAAACATAACCCTTCTTCATCACGGTACAAAAAGGTGGATATGGAAAAGTACAATAATAGCAACTACTTTACTGATAACATGTGCATCCGTTCTATTCCTAGCCATAAAGAAAAGAAAACAAGTTCTTCAAGAGAAGAGAAGGAAAGAAATGGCGATGAAATCATCTCTACTAGACGATTTTCGAAATGAATTGAAAAAGGGCCACGGTTTAAAAGTATTCGATTATACGTTGGTTATGGCAGCCACAAATGGATTTTCATCTGAAAACAAGTTAGGACAGGGAGGTTTCGGACCAGTTTATAAGGGAACTTTGCCAGCGGGAGAGGAGGTTGCCATAAAAAGACTTTCGAGAAGTTCTGCACAAGGAATTGTGGAGTTTAAAAACGAACTAACACTTATATGTGAACTTCAGCATATGAATCTTGTACAGCTACTTGGTTGCTGCATTCATGAAGAAGAGAAGATTCTAATTTACGAGTATATGCCCAACAAAAGCTTGGATTTCTATCTTTTCGACTGTACAAGAAGCAAATTGCTAGATTGGAATAAGCGGTTCAACATAATACAACGAATTGCTCAAGGATTATTGTATCTTCACAAGTACTCAAGACTCAAAGTCATTCACAGAGACTTGAAAGCCAGTAACGTACTTCTTGATGAGAACATGAATCCAAAAATTTCAGATTTTGGAATGGCTAGAATTTGTAGCCAAGAAGACTCTATATCAAATACGAACAGGGTTGTTGGGACATATGGTTATATGTCTCCGGAATACGCCATGGAAGGAGTGTTTTCTACAAAGTCTGATGTATATAGCTTTGGAGTGTTATTGCTTGAAATAGTTAGTGGACGAAAAAACACTAGTTTTTATGATGATGACCACCCAATAAATCTAATTGGACATGTATGGGAGTTATGGAAAGATGGAAAGTGTTTTGAATCAGTGGATCCATCATTAGAGGAGTCATTTGATTATGATGAAGTGCAGAGGTGTATTCATGTTGGTCTCATATGTGTTGAACATTATGCAAATGATAGACCTACAATGTCTGAAGTTATATCAATGTTGACAAATAAGAGTGAAAAAGTGTCTTCACCTAAAAGACCAGCATTCTATGTTCAAAGAGAGATGTTTAACAAGAATTTGTCGTCTACAGAGTTGTGTACTACTTCTACGATGGAAACTACCACTTCGTCGGAAATAGGATGA	2355	0.3864	MRLILHKLLLAFMHLWLCWSSSTHVHAADDSLKPGETLKYSSPSLYSKSRKYFLEFFSVSEALTYLAIRSEDEIVWEGNREQPVNQSDVVLSLNFSGFLKIESGSLKKPIILYSPPQPINNTVATLLDTGNFVLQHLHPNGTNILLWQSFDYPTETLVPTMKLGVNHKTGHRWLLISQITIELATPGAFSLEWEPTEQELIIRRRAKVCWKSGKLRNNRFENIPGDAQVVLIYTIVSNEEEDSFSFTSTNENLTRWWSLSDTGMLSYNNKKRYVARADLCYGYDTEAGCQRWQDIPKCRSPGDVFTKKTLRLNYQKQTYDDNQNISHSDCEAACWSDCNCNAFAEYFDDDTGCTFYIWNSSKDIIVEDSVYGQEVYILENKGNITLLHHGTKRWIWKSTIIATTLLITCASVLFLAIKKRKQVLQEKRRKEMAMKSSLLDDFRNELKKGHGLKVFDYTLVMAATNGFSSENKLGQGGFGPVYKGTLPAGEEVAIKRLSRSSAQGIVEFKNELTLICELQHMNLVQLLGCCIHEEEKILIYEYMPNKSLDFYLFDCTRSKLLDWNKRFNIIQRIAQGLLYLHKYSRLKVIHRDLKASNVLLDENMNPKISDFGMARICSQEDSISNTNRVVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIVSGRKNTSFYDDDHPINLIGHVWELWKDGKCFESVDPSLEESFDYDEVQRCIHVGLICVEHYANDRPTMSEVISMLTNKSEKVSSPKRPAFYVQREMFNKNLSSTELCTTSTMETTTSSEIG	784

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00541	784	SMART	blect_4	29	153	IPR001480	-
	Viun11g00541	784	ProSiteProfiles	Protein kinase domain profile.	467	753	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00541	784	SMART	serkin_6	467	738	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00541	784	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	432	542	-	-
	Viun11g00541	784	Pfam	D-mannose binding lectin	74	177	IPR001480	-
	Viun11g00541	784	Gene3D	Phosphorylase Kinase; domain 1	419	542	-	-
	Viun11g00541	784	SUPERFAMILY	Protein kinase-like (PK-like)	452	766	IPR011009	-
	Viun11g00541	784	PIRSF	SRK	1	283	IPR024171	GO:0004674
	Viun11g00541	784	PIRSF	SRK	276	784	IPR024171	GO:0004674
	Viun11g00541	784	Pfam	PAN-like domain	298	359	IPR003609	-
	Viun11g00541	784	SUPERFAMILY	alpha-D-mannose-specific plant lectins	74	175	IPR036426	-
	Viun11g00541	784	CDD	STKc_IRAK	473	740	-	-
	Viun11g00541	784	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	543	746	-	-
	Viun11g00541	784	Pfam	Protein tyrosine and serine/threonine kinase	470	713	IPR001245	GO:0004672\|GO:0006468
	Viun11g00541	784	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	119	763	-	-
	Viun11g00541	784	Gene3D	Transferase(Phosphotransferase) domain 1	543	758	-	-
	Viun11g00541	784	ProSiteProfiles	Bulb-type lectin domain profile.	23	147	IPR001480	-
	Viun11g00541	784	Gene3D	-	22	150	IPR036426	-
	Viun11g00541	784	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	588	600	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00541	Viun-Chr11	5486273	5490097	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00541	455	756	Receptor kinase-like Gene Family	AT3G45860	55.921	8.09e-121	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00541		PK_Tyr_Ser-Thr	5.8e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00541	-		-	vun:114169232	1125.15