Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00539 ATGAATCCAAAAATTTCAGATTTTGGAATGGCTAGAATTTGTAGCCAACAAGACTCTATATCAAATACGAACAGGGTTGTTGGAACATATGGTTATATGTCTCCGGAATACGCCATGGAAGGAGTGTTTTCTACAAAGTCTGATGTATATAGCTTTGGAGTGTTGTTGCTTGAAATAGTATGGGAATTATGGAAAGAAGAAAAGTGTTTTGAATCAGTGGATCCATCATTAGAGGAGGTATTTGATTATGATGAAGTGCAGAGGTGTATTCGTGTTGGTCTCATATGTGTTGAACATTATGCAAATGATAGACCTACAATGTCTGAAGTTATATCAATGTTGACAAATAAGAGTGAAAAAGTGTCTTCACCTAAAAGACCAGCATTCTATGTTCAAAGAGAGATGTTTAACAAGAATTTGTCGTCTACAGAGTTGTGTACTACTTCTACGATGGAAATTACCACTTCGTCGGAAATAGGATGA 483 0.3582 MNPKISDFGMARICSQQDSISNTNRVVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIVWELWKEEKCFESVDPSLEEVFDYDEVQRCIRVGLICVEHYANDRPTMSEVISMLTNKSEKVSSPKRPAFYVQREMFNKNLSSTELCTTSTMEITTSSEIG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00539 160 Gene3D Transferase(Phosphotransferase) domain 1 1 138 - -
Viun11g00539 160 Pfam Protein tyrosine and serine/threonine kinase 4 114 IPR001245 GO:0004672|GO:0006468
Viun11g00539 160 SUPERFAMILY Protein kinase-like (PK-like) 1 150 IPR011009 -
Viun11g00539 160 ProSiteProfiles Protein kinase domain profile. 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00539 160 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00539 Viun-Chr11 5468579 5469279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00539 1 132 Receptor kinase-like Gene Family AT4G23280 48.052 9.54e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00539 PK_Tyr_Ser-Thr 6.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00539 - - vun:114170128 291.967