Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00533 ATGAGGCTTATCTTACAGAAACTACTGCTTCCTTTCATGCACTTGTGGTTGTGCTGGAGTTCTTGTGTTCATGTTCACGCAGCACATGACAGTTTAAAGCCCGGTGATACACTGAATTCTTCCTCACCATCACTATATTCAAAGAGTCGCAAATATTTTCTCAGATTTTATACGATTGGAATTGCGGATGGAGATTTTACTTACTTGACAGTCCAAAGTGCATATGAGAATCAGATAGTTTGGAAGGGTAATAGGGAACAACCTATCAATGATGACGCAGTTCTATCCCTAAACTTCTCAGGCGTGCTGAAAATAGAATCTGAATCTGTGAAGAAACCAATAATTCTGTATTCTCCTCCTCAACCTATCAACAACACTGTGGCCACTTTGTTGGACACAGGCAACTTTGTGCTTCAACATCTTCACCCCAATGGGAGGTTATCTTACAACAACAAAGAGGGATATGTTGCAAGGGCTGATCTGTGTTATGGATATAACACAGAAGGAGGGTGCCAAAGATGGCAGGATATACCTAAGTGCAGGAGTCCTGGTGATGTCTTCACCAAAAAGATTCTTTTCTCTAATTATGAAAATCAAACCTTTGAATTCAATCAGAATATTATTCACAGTGATTGTGAGGCTGCTTGCTGGAGCGATTGTAATTGCAATGGATTCAGAGAACTTTCTGATGATGGAATTGGATGTGATTTCTATCATTGGAATTCATCCAAAGATATTATAGTTGACGGCACTACTTCGGGTGAAGACGTTTACATACTGGAGACCAAAGGGAAGATAATAACCCCTCATCATCACGGTAAAAAAAGTTGGATATGGATAAGTACAGTAATAGCAGCCACTATACTGCTAATATGCGCATCCATTCTGTTCGTAGCCATAAAGAAACGAAAACATGTGCTTCAAGAGAAGAAACGGAAAGAAATGGCGATGAAATTATCCGAAATCGATGATTTTGGAAATGATTTTAAAAAGGGACACGGTTTGAAAGTGTTCGATTATACATTAGTTGTGGAAGCCACAAATGGGTTTTCATCCGAAAATAAGTTAGGACAGGGAGGTTTTGGACCAGTTTATAAGGGAACTTTGCCAACAGGAGAGGAGGTTGCTATAAAAAGGCTTTCAAAAAGTTCGACACAGGGAATTGTGGAGTTTAAAAACGAAGTAACACTAATATGTGAACTTCAGCACATGAATCTTGTTCAACTACTTGGTTGCTGCATTCATGAAGAAGAGAAGATTCTAATTTACGAGTATATGCCCAACAAAAGCTTGGATTTCTATCTTTTCGACTGTACAAGAAGCAAATTACTAGATTGGAATAAGCGTTTCAACATAATACAAGGAATTTCTCAAGGATTATTATATCTTCACAAGTACTCAAGACTTAAAGTCATTCACAGAGACTTGAAAGCAAGTAATATACTTCTTGACGAGAACATGAATCCAAAAATTTCAGATTTTGGAATGGCTAGAATGTTTACCCAACAAGACTCCGTATCAAATACCAACAGGGTTGTTGGGACATACGGTTATATGTCTCCGGAATATGCTATGGAAGGAGTTTTTTCTACAAAGTCTGATGTGTACAGTTTTGGAGTGTTGATGCTTGAGATCGTTTGTGGACGGAAAAACACTAGTTTTTATGATGATGATCACCCAATAAATTTAATTGGACACGTATGGGAATTATGGAAAGATGACAAGTGTGTTGAATCAGTGGATCCATCATTAATGGAGTCATTAGATTCTGATGATGTGCAGAGGTGTATTCATGCCGGTCTTCTATGTGTTGAACATTATGCAAATGATAGACCTACAATGTCTGATGTTATATCAATGTTGACAAACAAGAGTGAAAGAGTGTCTTTACCTAAAAGACCAGCATTTTATGTTCAAAGAGAGATGCTAAACGAAAATTTATCTTCTGCGGGGCTATGTACCGCTTCTACAGTAGAAATTACTACTTCGTTGGAAATAGAATTATCTCAGTGA 2013 0.3785 MRLILQKLLLPFMHLWLCWSSCVHVHAAHDSLKPGDTLNSSSPSLYSKSRKYFLRFYTIGIADGDFTYLTVQSAYENQIVWKGNREQPINDDAVLSLNFSGVLKIESESVKKPIILYSPPQPINNTVATLLDTGNFVLQHLHPNGRLSYNNKEGYVARADLCYGYNTEGGCQRWQDIPKCRSPGDVFTKKILFSNYENQTFEFNQNIIHSDCEAACWSDCNCNGFRELSDDGIGCDFYHWNSSKDIIVDGTTSGEDVYILETKGKIITPHHHGKKSWIWISTVIAATILLICASILFVAIKKRKHVLQEKKRKEMAMKLSEIDDFGNDFKKGHGLKVFDYTLVVEATNGFSSENKLGQGGFGPVYKGTLPTGEEVAIKRLSKSSTQGIVEFKNEVTLICELQHMNLVQLLGCCIHEEEKILIYEYMPNKSLDFYLFDCTRSKLLDWNKRFNIIQGISQGLLYLHKYSRLKVIHRDLKASNILLDENMNPKISDFGMARMFTQQDSVSNTNRVVGTYGYMSPEYAMEGVFSTKSDVYSFGVLMLEIVCGRKNTSFYDDDHPINLIGHVWELWKDDKCVESVDPSLMESLDSDDVQRCIHAGLLCVEHYANDRPTMSDVISMLTNKSERVSLPKRPAFYVQREMLNENLSSAGLCTASTVEITTSLEIELSQ 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00533 670 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 144 IPR036426 -
Viun11g00533 670 SMART serkin_6 350 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00533 670 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 315 425 - -
Viun11g00533 670 CDD STKc_IRAK 356 623 - -
Viun11g00533 670 Pfam Protein tyrosine and serine/threonine kinase 353 596 IPR001245 GO:0004672|GO:0006468
Viun11g00533 670 Gene3D Phosphorylase Kinase; domain 1 298 425 - -
Viun11g00533 670 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 426 629 - -
Viun11g00533 670 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Viun11g00533 670 SMART blect_4 36 145 IPR001480 -
Viun11g00533 670 SUPERFAMILY Protein kinase-like (PK-like) 335 642 IPR011009 -
Viun11g00533 670 ProSiteProfiles Protein kinase domain profile. 350 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00533 670 Gene3D Transferase(Phosphotransferase) domain 1 426 634 - -
Viun11g00533 670 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 202 655 - -
Viun11g00533 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00533 Viun-Chr11 5355037 5358004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00533 310 639 Receptor kinase-like Gene Family AT4G11480 55.891 1.49e-124 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00533 PK_Tyr_Ser-Thr 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00533 - - vun:114169229 1375.92