LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00528	ATGGAACCTAGAAATGAGGAGTTCCAGCCGGGATCTCAATCAGTAATTCAGGACCATATGGATGGCATGCATAGTATTAGACGACCATCTGACTATAGCACATCAGATGTTAAACCGGTACTTAATTATTCAATACAGACGGGTGAGGAATTTGCTCTTGAATTCATGCGGGATAGGGTGAATCTCAGGAAGCCCATGTTTTCAAATGTTAGTGATTCCAATTCCAATTATGCAACTGGTTGCATGGAACTGAAAGGTGTCTTAGGCATCAACCATGCAGCTTCTGAAAGTGGATCAGACATTTCTGTGCTATCAAAAACTGAGAAAGGTCCGACAGAGTTTAACAGACCGAGTACATCATTACATGGAGACAGAAGCAATTATGGGTCAATTCGGTCAATACCAAGAGTTTCACTGAATCAAGAGAATAGTCGATTTGTACGTGGGTATGGGTCTTCTGTTGGTTCTGACAGCTCGACAATGATGAAGTGTCTTTGTAGCTTTGGTGGCAGAATATTACCACGACCAAGTGATGGGAAGTTAAGGTATGTTGGAGGTCAAACTCGTATTCTTCGTCTAAGAAAGGACATATCTTGGCAGGAGCTTATGCAAAAAGCATTGTTAATCTATAATCTGGTTCATGTACTAAAATATCAACTTCCTGGGGAAGATCTTGATGCTTTGGTATCAGTGTCGTCTGATGAGGATTTGCAGAATATGATGGAGGAATGTAATCTTCTAGAAGATAGAGAGCGCTCAAAAAAGCTTAGGCTGTTTTTGTTCTCAATGAGTGATTTGGAAGATGCTCATTTTTCTCTCAGCAGCATTAGTGATGACTCTGAGGTCCAATATGTTGTTGCTGTTAATGGCATGGACTTTGGATCAATAAACAGCTCAACCCCACTTGGTGTCAGTTTCTCAGCTGATGATCTGCATGAATTGGAAAGGCAAACTTCACATCGAGAGACTAATAATAGAGCTGCTGTAGAATCTGTAGGTGCCAGTGCTCCCTTGACTAACAAATCTGATCCTTCATTGACTATTCATTCTTCACAAGCAATTCTACCAAATGCCTCAAATTCTTATGAACTTGATCAACTTTCTTATGGTGACCAAATGCCTCAATTTGGGGAATATAGTCGTCAATATTTTGTTCACCATGGCCTTAATTCCACTCATAACCCTGTTGGAGAGACTTTTATTCCCATGGCTCCTCATCTGCTTAACAATCAACAAGGGGTTCAGAATGAAGACCATCTATCTAGTGGATTACAAATTCAAAATTCTCAGTTATCTGCAATGCAGGTGAAAAAGATAAGTGATAATTCAGTTAAGCAAGGGAGTGACTCTGAAAAAGTTTTAACCTCAGAAACCACGTCTCCAGCTCCCGTACAAACCTTTGACAGTGGCTTAAAAAGTAATTTTCCTGAAGCATCGGTTGCAGTTACCATGCCTGAGGGACATCCACCTTCATTACCTTCAACAAAAAAGGTTCAGCACAAGGATTATGAAGAGTTGTCTTCTACTTCTAGCAGTGCATTTGTTCCGACTTATGTTGATTCCCATCCAAATGCAATTGATTTGAGTTGTCTTCATCCTCCTCCACTTCCTGAAAGAGTTTACTATTCAGAAAGAACTCCGAGGGAGCAAGTAGAGTTGCTAAATCGTTCCTCAAAGTCAGATGACACACACAGTTCTCAAATTCATGTGTCAGATTTACTTTCTGATGTCAACCCAGAGGACCCAGTAATAGAATCTGGGGGCAACTTGCATCCAACTGACGAATTGGTTAATACAGAAAAGCCCTTGCATGCAGATGGCCATACCACTGACAATGGGTTTTCCAAAAATCAAATGAGCAAACCGTTGCCTGATACAAACAGTCTTATTAAGTCAAAACTATCTGAGCTCACAGACCCTGAATTGAAGCCAGTGTTGTCAAGTAATGAAGGAACTAAAGATGTTGAAACTGAAAATTATCGCAAAGATAGCCAAACCAAGCCCTTGTTTGATGAAACTGAAACCAAGACCAAAACCAAAGATGGTAAATCAGATCTTCCTACTTTGCATCATGTTTCCTCTGCTAAGCGTCTTGATGATCTAGCTTCCAATCTTCCAGAGATTGATTGGGGTGAAGCCTCAGGGAAGGAATCTAATGATGGTTCTGTGGGGCAAGAACTACCTGTATCTGTAACTGGGAGCGTAACTAAAGATGTTAATCAAGATTTCCCCCAAAATGTTGTTTCCAAACAATCTCAAGGGGACATTCTTATTGACATTGATGATCGTTTTCCCCGGGAATTGCTTTCAGACATGTTTTCTAAAGCAATACATGGAGAAGATCCCTCCAGTCTGCATCCATTGTCTGGAGATGGAGTAGGCTTAAGCATAAATATGGAAAATCATGAACCCAAAAGATGGTCATATTTTCATAAATTAGCACAAGGGCTTGATAATGTCTCTCTTATTGATCAAGATCATCTTGGTTTTCCACCTGGGATAGGAAAAACAGAAGATAGTAGAACACATCATGTTATGCCGCTAACAACTGATGGAGATCCCCTACATCATGAAGATTCCCATCTCAAATTTAATGAAGAAAATCCTGAGGACTTGCATTTAAGGATTGAAACTGAAACTACCATTCTGAAGTCTAATTATAATCAATCCCAACTTAAGGACAATGAGAGTATGCAGTTTGATGCTATGATGGAAAATCTAAGAATGCAAGGGTCAGAGTTTGAGGATGGCAAATTTGATGTGAAAAATAGCAACCTACCTCCACCCCTTGATCCTTCTTTGGGAGATATTGACATTAGTACTGTGCAGGTCATTAAGAATGAAGATCTTGAGGAGCTGCGAGAACTAGGTTCTGGTACCTTTGGGACCGTGTACCATGGAAAATGGAGAGGAACAGATGTTGCTATTAAAAGAATAAAGAAGAGCTGCTTCACTGGTCGGTCATCTGAACAAGAGAGATTGACTGTGGAGTTTTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTGGTACAGCATGGACCAGGTGGTACAATGGCCACTGTGGCAGAATATATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCTGCTTTTGGAATGGAATATTTGCACTCGAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTTGTAAACTTGAAAGATCCTTTACGTCCAATATGCAAGGTTGGTGATTTTGGCTTATCAAAAATTAAGCGAAATACTTTGGTTACTGGTGGTGTGCGTGGGACACTACCTTGGATGGCACCAGAGCTTCTGAATGGCAGCAGCAATAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATTGTATTATGGGAAATTCTTACCGGTGAGGAGCCATATGCCAACATGCATTATGGTGCAATTATAGGTGGAATTGTAAATAACACATTAAGGCCAACCATCCCTAGTAACTGTGATCCTGAATGGAGAACCCTGATGGAACAATGCTGGGCTCCCAATCCTGCTGTCAGACCATCCTTCACAGAAATTGCCAGTCGTTTGCGCATAATGTCTGCAGCAGCAAGCCAAACCAAAACACAGGGCCATAAAACTTCAAAATGA	3699	0.4079	MEPRNEEFQPGSQSVIQDHMDGMHSIRRPSDYSTSDVKPVLNYSIQTGEEFALEFMRDRVNLRKPMFSNVSDSNSNYATGCMELKGVLGINHAASESGSDISVLSKTEKGPTEFNRPSTSLHGDRSNYGSIRSIPRVSLNQENSRFVRGYGSSVGSDSSTMMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWQELMQKALLIYNLVHVLKYQLPGEDLDALVSVSSDEDLQNMMEECNLLEDRERSKKLRLFLFSMSDLEDAHFSLSSISDDSEVQYVVAVNGMDFGSINSSTPLGVSFSADDLHELERQTSHRETNNRAAVESVGASAPLTNKSDPSLTIHSSQAILPNASNSYELDQLSYGDQMPQFGEYSRQYFVHHGLNSTHNPVGETFIPMAPHLLNNQQGVQNEDHLSSGLQIQNSQLSAMQVKKISDNSVKQGSDSEKVLTSETTSPAPVQTFDSGLKSNFPEASVAVTMPEGHPPSLPSTKKVQHKDYEELSSTSSSAFVPTYVDSHPNAIDLSCLHPPPLPERVYYSERTPREQVELLNRSSKSDDTHSSQIHVSDLLSDVNPEDPVIESGGNLHPTDELVNTEKPLHADGHTTDNGFSKNQMSKPLPDTNSLIKSKLSELTDPELKPVLSSNEGTKDVETENYRKDSQTKPLFDETETKTKTKDGKSDLPTLHHVSSAKRLDDLASNLPEIDWGEASGKESNDGSVGQELPVSVTGSVTKDVNQDFPQNVVSKQSQGDILIDIDDRFPRELLSDMFSKAIHGEDPSSLHPLSGDGVGLSINMENHEPKRWSYFHKLAQGLDNVSLIDQDHLGFPPGIGKTEDSRTHHVMPLTTDGDPLHHEDSHLKFNEENPEDLHLRIETETTILKSNYNQSQLKDNESMQFDAMMENLRMQGSEFEDGKFDVKNSNLPPPLDPSLGDIDISTVQVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQHGPGGTMATVAEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSNCDPEWRTLMEQCWAPNPAVRPSFTEIASRLRIMSAAASQTKTQGHKTSK	1232

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00528	1232	MobiDBLite	consensus disorder prediction	552	566	-	-
	Viun11g00528	1232	CDD	PB1_UP2	165	261	-	-
	Viun11g00528	1232	PANTHER	SERINE-THREONINE PROTEIN KINASE	213	1214	-	-
	Viun11g00528	1232	MobiDBLite	consensus disorder prediction	640	690	-	-
	Viun11g00528	1232	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	1075	1087	IPR008271	GO:0004672\|GO:0006468
	Viun11g00528	1232	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	181	263	-	-
	Viun11g00528	1232	SUPERFAMILY	CAD & PB1 domains	177	265	-	-
	Viun11g00528	1232	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	1038	1230	-	-
	Viun11g00528	1232	ProSiteProfiles	Protein kinase domain profile.	950	1215	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00528	1232	FunFam	Octicosapeptide/phox/Bem1p domain kinase superfamily protein	943	1037	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00528	Viun-Chr11	5211170	5222574	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00528	35	598	MAP Kinase Kinase Kinase	AT1G16270	37.049	3.47e-86	303

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-6	Viun11g00528		PK_Tyr_Ser-Thr	3.2e-62	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00528	-		-	gmx:100817937	2086.23

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