Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00526 ATGGAAGACATAAACAAGTGGCTATTATCATCTTATTTGAATGAAAGTGTTAACCATGATTTTGCCATCAGAAGGTATTGTCCTGCAAGAATGGAGGAAGATCAAGAGGGAGTAGTGTTTGATGATACTGAATTATGTTCTTCTGATGCAAGCACTCCTTGTTTGGCTTCATCAGAAGTTGATGACTTTGTTGACAGCTTCATCAACATGGATCAGTATGAGAAAGCAGATGAAGGGCACCAAGAGAAGCATCAAACTTTAGGCCACTGTATGGTGATGAATAATGATGATGCTGATGCCGATGCTGATGAACACTCCTCCATGAATGGTGTCTTTGGATATCTTCCAACCACCATGGAGGATTCAGAGTTGGAAATGTATGAAAATCTCACAATGTTGGAAGAGGAGGTTGCAACAATGAGTGACTCTTTTGGTACTTTACCAGAGTTTGTGCATTGTGGAAAAGAGGCCAACCTTGGTGTGCAACAAGGGTTGGAGTTAGTTCATATGCTTCTGGCTTGTGCTGAAGCTGTGGGGTGCAGGGACAACCACCAAGCAGAGTTGCTGATTAACAGAATTTTTGCTTTGGCAAGCCCTTCAGGAGATGCACTGCAGAGAGTTTCTTACTGTTTTGCCACAGGATTGAAGTGCAGGTTCTCAAAAAGCACTTCCATGGATATAACTTTGATCAATAGGGAGAACAAGCTTGAAGCATTTCATCTTCTTTACCAAACCACACCTTACATTGCCTTTGGTTTCATGGCAGCAAATGAAGCCATATTCCAAGCATCACAAGGAAAGAACTCAATACACATTGTTGATCTAGGAATGGAGCATACCCTTCAATGGTCTTCCCTTATAAGGGCCTTTGCTTCAAGGCCTGAAGGGCCTCCAATGGTTAGAATCACTGGATTAACACACAATGAAGAAGATACCTCTAAACTTCAAACCAGCATGAATGTGCTTGTGAATGAAGCAAGCTCTTTGGGGATTCATCTTGAATTTTTTACAATTTCTGAGCCTGCATCTTCTTCTCTTCTTACTGTGGAGAAGCTGAACTTGAGAAAAGGTGAAGCTTTATTTGTTAACGGTATCTTGCAGTTGCACAAGTATGTGAAAGAGAGTAGGGGTAATCTGAAGGAGATTCTCCTATCAGTGAAGAAGTTAGGTCCAACTGCTTTTACAGTGGTGGAGCAAGACACAAACCATAATGGCCCTTTTTTCCTTGGGAGATTTTTGGAGTCACTTCACTATTACTCAGCAATATTTGACTCTCTTGAGGCATGCATGCCAAGAAATAGCCAACACAGGATGAGGATAGAGAGATTGCACTTTGCAGAGGAAATTCTGAATATTGTAGCTTGTGAGGGTTCAGAGAGAACAGAAAGACATGAAAGGGTAGACCAATGGAGAAGGCAATTAGGCAGAGCAGGATTTCAGGTGATGCCATTGAAGTGCACAAGCCAAGTTAGAATGATGCTTTCTGTTTATGATTGTGATGGATACACATTATCCAGTGAGAAGGGAAACCTTCTACTTGGATGGAAAGGAAGGCCAGTGATGATGTCTTCTGCATGGCAAGTGGCAAGTGTTTGA 1596 0.4185 MEDINKWLLSSYLNESVNHDFAIRRYCPARMEEDQEGVVFDDTELCSSDASTPCLASSEVDDFVDSFINMDQYEKADEGHQEKHQTLGHCMVMNNDDADADADEHSSMNGVFGYLPTTMEDSELEMYENLTMLEEEVATMSDSFGTLPEFVHCGKEANLGVQQGLELVHMLLACAEAVGCRDNHQAELLINRIFALASPSGDALQRVSYCFATGLKCRFSKSTSMDITLINRENKLEAFHLLYQTTPYIAFGFMAANEAIFQASQGKNSIHIVDLGMEHTLQWSSLIRAFASRPEGPPMVRITGLTHNEEDTSKLQTSMNVLVNEASSLGIHLEFFTISEPASSSLLTVEKLNLRKGEALFVNGILQLHKYVKESRGNLKEILLSVKKLGPTAFTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEACMPRNSQHRMRIERLHFAEEILNIVACEGSERTERHERVDQWRRQLGRAGFQVMPLKCTSQVRMMLSVYDCDGYTLSSEKGNLLLGWKGRPVMMSSAWQVASV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00526 531 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 123 522 IPR005202 -
Viun11g00526 531 Pfam GRAS domain family 167 527 IPR005202 -
Viun11g00526 531 ProSiteProfiles GRAS family profile. 158 527 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00526 Viun-Chr11 5194985 5196580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00526 162 531 GRAS Transcription Factor Family AT1G66350 38.770 5.87e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun11g00526 GRAS 6.4e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00526 - - vum:124822266 823.928