Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00521 ATGTCGGTGTTGATCGTGACGAGCTTAGGGGACCTTGTCGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTTTATTTCACACTGTTCAAAAGGATTTTACAGCTCAAACGGGCGATCCAACTGGCACAGGAACTGGCGGTGATTCTGTTTACAAGTTTCTTTATGGCGATCAAGCCCGTTTTTTCAGTGATGAAATTCATATTGATCTTAAGCATTCCAAAACTGGAACAGTTGCCATGGCAAGTGCTGGGGAGAATTTAAATGCTTCACAGTTCTATATCACACTGCGTGATGACCTTGACTACCTCGATGGCAAGCACACTGTCTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTAACTAGAATAAATGAGGCTTATGTGGATGACAAAGGAAGACCATATAAAAATATAAGAATCAAGCACACGTACATCCTAGAGGATCCTTATGATGATGCTTCTCAACTATCTGAGTTCATTCCTGAAGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGACGATGAAGTACGACTTGAAGATGATTGGGTGCCCATGGATGAGCAATTAAATTCAGCAGAACTTGAGGAGGTTATCAGATCAAAGGAAGCTCATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCTGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTGACTGAGGATGAGGACTTGAATACTATATTTTCTCGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGACCACAAAACTGGTGACAGTTTATGCTATGCTTTCATAGAATTTGAGGACAAACTGTCATGTGAGCAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTCGCAAAATTGTGGTCCCAATACAGGCGGAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAGTGTGGCTCTACAGATCATATTGCCAAGGACTGCACTGGAGATGCTACAATGAAACAACCACAAACAAAATACATTTTAAAGGATGATAATACCCAACGTGGTGGAGATAATTCTAGATATGAAATGGTTTTTGATGGAGATGATAACCCAGAAAGTCCAAGGCAAGATGTAAAACACCGAAGGCATGATAGGGATGACCCAGTTGAGAAAAAAGGTAGGGAAGAAGATTTTAAAGATCATAGAAGTCGTAGGGATCAGGATATGGTAGACTCGAAAAGAGATAGGTACGGTGATAGAAGTAGAGGGGATGGGGGAAATGGAGAAAACAAAGCACGATATGAAAGAGGTGCAAGGGATTTGGATTCCAACGCTGACAAGAATGACAGAGATAGGCACAAAGGTAGACATGGAAATGATGATTACAGGTGGAAACATGATCATGGATCCAGAAAAGAAGAGGATGATAGCAACAAGCGTAAAGATGAGCGAGACACTAGAAGAAGAGATGAAGATGATAGCTACAAGCGTAAAGATGAGCGAGACACTAGAAGAAGAGATGAAGATGATAGCTACAAGCGTAAAGATGAGCGAGACTCTAGAAGAAGAGATGAAGATGATAGGAGAAACACAAATTCTAGCCATTTGGAGAGAAGGAATGACAGAGGTTATAGGAAGAGACCTGAAGAGAGTGGAAAACAAGATGTGAAGATTGATTCTGGACGAAGAAAAAGAAGTCCAGCTGATGATGATTACAAAAATGGAAGGAAAGATGAAGATTACAGACATAGAAAGGAAGAACGAGGTAAAAGGCAAGATATTGAAGCTGATGAGGATTACAAACGTAGAAGGGAGGATGGAGATTACAGACCCAGAAGGGAGGAACGTGGACACAAAAGACAAGATATTGAAGCTGATGATTATCCTCATAGGAGGCATCATGGTGACAGGAGATGA 1983 0.409 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDDKGRPYKNIRIKHTYILEDPYDDASQLSEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNSAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLNTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDATMKQPQTKYILKDDNTQRGGDNSRYEMVFDGDDNPESPRQDVKHRRHDRDDPVEKKGREEDFKDHRSRRDQDMVDSKRDRYGDRSRGDGGNGENKARYERGARDLDSNADKNDRDRHKGRHGNDDYRWKHDHGSRKEEDDSNKRKDERDTRRRDEDDSYKRKDERDTRRRDEDDSYKRKDERDSRRRDEDDRRNTNSSHLERRNDRGYRKRPEESGKQDVKIDSGRRKRSPADDDYKNGRKDEDYRHRKEERGKRQDIEADEDYKRRREDGDYRPRREERGHKRQDIEADDYPHRRHHGDRR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00521 660 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 563 IPR035542 -
Viun11g00521 660 SMART rrm1_1 244 317 IPR000504 GO:0003723
Viun11g00521 660 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Viun11g00521 660 SUPERFAMILY Cyclophilin-like 1 175 IPR029000 -
Viun11g00521 660 Gene3D - 324 376 - -
Viun11g00521 660 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Viun11g00521 660 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Viun11g00521 660 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Viun11g00521 660 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Viun11g00521 660 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Viun11g00521 660 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Viun11g00521 660 SUPERFAMILY RNA-binding domain, RBD 229 339 IPR035979 GO:0003676
Viun11g00521 660 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
Viun11g00521 660 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Viun11g00521 660 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Viun11g00521 660 MobiDBLite consensus disorder prediction 365 660 - -
Viun11g00521 660 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Viun11g00521 660 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Viun11g00521 660 Gene3D - 178 323 IPR012677 -
Viun11g00521 660 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Viun11g00521 660 CDD RRM_PPIL4 240 322 - -
Viun11g00521 660 CDD cyclophilin_RRM 4 168 IPR035538 -
Viun11g00521 660 Gene3D - 1 174 IPR029000 -
Viun11g00521 660 MobiDBLite consensus disorder prediction 372 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00521 Viun-Chr11 5139687 5150172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00521 7 166 U-box Gene Family AT5G67530 40.625 1.55e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00521 K12735 - gmx:100776900 1038.87