LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00521	ATGTCGGTGTTGATCGTGACGAGCTTAGGGGACCTTGTCGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTTTATTTCACACTGTTCAAAAGGATTTTACAGCTCAAACGGGCGATCCAACTGGCACAGGAACTGGCGGTGATTCTGTTTACAAGTTTCTTTATGGCGATCAAGCCCGTTTTTTCAGTGATGAAATTCATATTGATCTTAAGCATTCCAAAACTGGAACAGTTGCCATGGCAAGTGCTGGGGAGAATTTAAATGCTTCACAGTTCTATATCACACTGCGTGATGACCTTGACTACCTCGATGGCAAGCACACTGTCTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTAACTAGAATAAATGAGGCTTATGTGGATGACAAAGGAAGACCATATAAAAATATAAGAATCAAGCACACGTACATCCTAGAGGATCCTTATGATGATGCTTCTCAACTATCTGAGTTCATTCCTGAAGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGACGATGAAGTACGACTTGAAGATGATTGGGTGCCCATGGATGAGCAATTAAATTCAGCAGAACTTGAGGAGGTTATCAGATCAAAGGAAGCTCATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCTCCTGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTGACTGAGGATGAGGACTTGAATACTATATTTTCTCGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGACCACAAAACTGGTGACAGTTTATGCTATGCTTTCATAGAATTTGAGGACAAACTGTCATGTGAGCAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTCGCAAAATTGTGGTCCCAATACAGGCGGAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAGTGTGGCTCTACAGATCATATTGCCAAGGACTGCACTGGAGATGCTACAATGAAACAACCACAAACAAAATACATTTTAAAGGATGATAATACCCAACGTGGTGGAGATAATTCTAGATATGAAATGGTTTTTGATGGAGATGATAACCCAGAAAGTCCAAGGCAAGATGTAAAACACCGAAGGCATGATAGGGATGACCCAGTTGAGAAAAAAGGTAGGGAAGAAGATTTTAAAGATCATAGAAGTCGTAGGGATCAGGATATGGTAGACTCGAAAAGAGATAGGTACGGTGATAGAAGTAGAGGGGATGGGGGAAATGGAGAAAACAAAGCACGATATGAAAGAGGTGCAAGGGATTTGGATTCCAACGCTGACAAGAATGACAGAGATAGGCACAAAGGTAGACATGGAAATGATGATTACAGGTGGAAACATGATCATGGATCCAGAAAAGAAGAGGATGATAGCAACAAGCGTAAAGATGAGCGAGACACTAGAAGAAGAGATGAAGATGATAGCTACAAGCGTAAAGATGAGCGAGACACTAGAAGAAGAGATGAAGATGATAGCTACAAGCGTAAAGATGAGCGAGACTCTAGAAGAAGAGATGAAGATGATAGGAGAAACACAAATTCTAGCCATTTGGAGAGAAGGAATGACAGAGGTTATAGGAAGAGACCTGAAGAGAGTGGAAAACAAGATGTGAAGATTGATTCTGGACGAAGAAAAAGAAGTCCAGCTGATGATGATTACAAAAATGGAAGGAAAGATGAAGATTACAGACATAGAAAGGAAGAACGAGGTAAAAGGCAAGATATTGAAGCTGATGAGGATTACAAACGTAGAAGGGAGGATGGAGATTACAGACCCAGAAGGGAGGAACGTGGACACAAAAGACAAGATATTGAAGCTGATGATTATCCTCATAGGAGGCATCATGGTGACAGGAGATGA	1983	0.409	MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDDKGRPYKNIRIKHTYILEDPYDDASQLSEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNSAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLNTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDATMKQPQTKYILKDDNTQRGGDNSRYEMVFDGDDNPESPRQDVKHRRHDRDDPVEKKGREEDFKDHRSRRDQDMVDSKRDRYGDRSRGDGGNGENKARYERGARDLDSNADKNDRDRHKGRHGNDDYRWKHDHGSRKEEDDSNKRKDERDTRRRDEDDSYKRKDERDTRRRDEDDSYKRKDERDSRRRDEDDRRNTNSSHLERRNDRGYRKRPEESGKQDVKIDSGRRKRSPADDDYKNGRKDEDYRHRKEERGKRQDIEADEDYKRRREDGDYRPRREERGHKRQDIEADDYPHRRHHGDRR	660

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00521	660	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4	1	563	IPR035542	-
	Viun11g00521	660	SMART	rrm1_1	244	317	IPR000504	GO:0003723
	Viun11g00521	660	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	243	321	IPR000504	GO:0003723
	Viun11g00521	660	SUPERFAMILY	Cyclophilin-like	1	175	IPR029000	-
	Viun11g00521	660	Gene3D	-	324	376	-	-
	Viun11g00521	660	SMART	c2hcfinal6	340	356	IPR001878	GO:0003676\|GO:0008270
	Viun11g00521	660	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	7	161	IPR002130	GO:0000413\|GO:0003755
	Viun11g00521	660	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	42	54	IPR002130	GO:0000413\|GO:0003755
	Viun11g00521	660	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	16	31	IPR002130	GO:0000413\|GO:0003755
	Viun11g00521	660	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	92	107	IPR002130	GO:0000413\|GO:0003755

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00521	Viun-Chr11	5139687	5150172	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00521	7	166	U-box Gene Family	AT5G67530	40.625	1.55e-31	128

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00521	K12735		-	gmx:100776900	1038.87

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