Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00512 ATGGATTGTTCAGCTGCAAGAAAGACACAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAGCAGTTTGTAGAACTGGGTAACGTTTTAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAAGTGATACAATTCAATTGCTGAAGGACCTTACCTCTCAAGTTAGTAAACTCAAAGAAGAATATGCTACACTAAATGAAGAATCTCGTGAGTTGACTATGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATTGATAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATGTTTCCATGGACTGCAATGGACCATTCAGTTGTCATGGCTCCACCGTCATATCCCTTTCCAATGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATTCCCCTACTTTGCTAATCAACATCCTGCAGTCATCTCTAATCCCCATTCAACTTTTGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACCCAGTACGTTTCACCTCCACTTCATCCAGGCTGTCGGTCAAATGTGTCTGAAAAACCAGAATCCAAAAGCAAATCATCCCGGGAGAGCAAGGCCGAAAAGAACGAGGATTCTAATGATGTCACTACAGACCTTCAGTTGAAGACTCCTGGGTCTTCTGCAGAACAGGATTTATCATCCGGACAAAGGAAATCTGGGAAGTTGTCAAGAAGGGAAAGCAGCTGCTGCTCGGAAGGGAATACATTAGGTAGGTGTTCTTCTTCTCATAGCGCTCAGGATAGCTCATCAAGCAGTGCAGTTGCAAGCAGAAAGGATAATGAATGA 852 0.4343 MDCSAARKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILSDTIQLLKDLTSQVSKLKEEYATLNEESRELTMEKNDLREEKASLKSDIDNLNNQYQQQLRTMFPWTAMDHSVVMAPPSYPFPMPMAVPPGPIPMQPFPYFANQHPAVISNPHSTFVPYLAPNTIVEQQSTQYVSPPLHPGCRSNVSEKPESKSKSSRESKAEKNEDSNDVTTDLQLKTPGSSAEQDLSSGQRKSGKLSRRESSCCSEGNTLGRCSSSHSAQDSSSSSAVASRKDNE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00512 283 MobiDBLite consensus disorder prediction 192 217 - -
Viun11g00512 283 MobiDBLite consensus disorder prediction 218 239 - -
Viun11g00512 283 Coils Coil 5 25 - -
Viun11g00512 283 MobiDBLite consensus disorder prediction 248 283 - -
Viun11g00512 283 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Viun11g00512 283 PANTHER TRANSCRIPTION FACTOR BHLH121 2 280 IPR044579 GO:0003700|GO:0006879
Viun11g00512 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Viun11g00512 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 77 IPR036638 GO:0046983
Viun11g00512 283 MobiDBLite consensus disorder prediction 179 283 - -
Viun11g00512 283 CDD bHLH_AtILR3_like 11 85 - -
Viun11g00512 283 Gene3D - 5 86 IPR036638 GO:0046983
Viun11g00512 283 Coils Coil 46 108 - -
Viun11g00512 283 SMART finulus 12 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00512 Viun-Chr11 4982783 4986587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00512 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 64.854 1.95e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g00512 HLH 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00512 - - gmx:100804250 447.203