Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00511 ATGAGCGAAGAACATAGAAACGTTGCATGTGTGTTGTGTAGGTATCAACATAGACGTCACGATGGTAGTTGTGAATTTGGACAGTATTTTGCGAGCAACAGGTCAATAGAGTTTGAGAATGCTTGCAAGCTTTTTGGTTTGGCAAATTTACTTAGATTGATGCGTAGTGTTGAAGCATCTGAAAGACAAGTTATGGCTGATTCCATTCTAATTGAGGGTAACATGTGGAGCAATGATCCCATTCATGGTGCCTTAGGTCATGTCCTTACTTTGAACAATCAAATCCAATCTGTTCAGAGAGAGTTACAAATTGTAAACACTATGCTAGCTCAATGCCCACTTCATACAACTTCACATGTTGCAAACACCGCTGTGGGTGATGTTGCTGGTTCTTCTCACACCGGACAATCAAGTGTTGTTCCGTCTCTTGAGAAAGAGGATGCTGCTCAAGAGAATGATGATGAGGTTAAGAGAAAGAATAAAAGAAAGCATTGA 495 0.404 MSEEHRNVACVLCRYQHRRHDGSCEFGQYFASNRSIEFENACKLFGLANLLRLMRSVEASERQVMADSILIEGNMWSNDPIHGALGHVLTLNNQIQSVQRELQIVNTMLAQCPLHTTSHVANTAVGDVAGSSHTGQSSVVPSLEKEDAAQENDDEVKRKNKRKH 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00511 164 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Viun11g00511 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 151 - -
Viun11g00511 164 MobiDBLite consensus disorder prediction 127 164 - -
Viun11g00511 164 MobiDBLite consensus disorder prediction 127 143 - -
Viun11g00511 164 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00511 Viun-Chr11 4938118 4939093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00511 6 96 AS2 family AT2G19820 38.043 2.56e-21 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun11g00511 LOB 9.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00511 - - pvu:PHAVU_011G178700g 200.675