Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00509 ATGTGGGCATCCGACGTACTTAACCCCATTTCACTTGAAGAAATAAGTTTATGCAACAACGAAATAGAGCAGTCGGAAGCATTACCTCATTCTATGCCTTCGCATACCCAAGAGGATGAATTAGATGAGGTACCTACGGTTGGAATGATTTTTGAAACAGTCGACAAGGTTAAAGACTTTTACAAGCAATACGCCATCAGATGTGGATTTGGTGTCCGTGTCAGAAGTTCAAGTAAAGGACAAGACAACGAATTATGTTTTGTGAAATTGTTCTGTAGCCGCGAAGGAAACTACGTGTCCACCATCCCTCCCGAATTGAAAAGCCAACCAAAAAAAACCAAGAACTGTGGTGCAAAGATAACAACAATTAAAAAAGGAGGTCAGTGGCACATAAAGAATGTCATACTTCATCACAATCATGACCTAAGCCCTATGAAGTCAAGAATGATGCGCGGCAACAAAAAATTGAACATGCAAGTGAAGCGAACACTCGATATGAATGATGAAGCCGGCGTCCGCATTAACAAAAGCTTCCAATCACTGGTTTGTGATGTTGGCGGATTTGAGAACCTTCCTTTTGTGGAGCGTGATGTTAGGAATTATATAGGACGACAAAGAAGGGCACTAGGTAAGGAAGGAGACGGCCAAGCATTGATGGCACACTTCTCTCACATGAGACAAATGAACGATGAATTCTACTTTGAAATTAACTTCGATGATAACAATAGAATATCAAATGTATTTTGGGCTGACGCACGTAGTAGGGCAGCATGCGCAGAATTTGGAGATGTTGTCTCCTTTGACACTACATATCTAACCAACAAATATGATATGCCATTTGCACCATTTGTTGGAGTCAATCACCATGGTCAGTCAATATTATTAGGATGCGGGTTGTTGTCAGCTGAAGATACAGAAACCTTTGTGTGGCTTTTTAACTGTTGGCATAATTGCATGTCATACAAGTCACCTGATGGCATTCTAACTGATCAGTGTAGGGCCATGCAAAATGCAATTGAGATTGTTTTTCCAAATACTCGTCACCGGTGGTGCTTATGGCATATAATGAAAAAGATCCCGGAAAAGTTGCAAGGATATACTCATTACAAGACTATCAAAAACAAGTTGAAGACATTGGTTTACGAGACCGTCAATGTTCACCAATTTGAGACCGGGTGGCAACAATTAATAAATGATCACGAGTTGGATAAGAATGAGTGGTTGGGCACACTATACGAAGAAAGACAACGGTGGGTGCCTTGCTATTTGAAAGGAAATTTTTGGGCTGGTATGTCCACCACACAACGAAGTGAGGGACTGAATGCCTTCTTTGATGGATTCATCAATTCAACGACAATGTTACAGCAGTTTGTAGTACAGTACGAAAATGCGCTACGTCACAAAGCTGAAAAGGAATGCGAGGCGGACTTTGCTTCTTTGAACACTACAATCCCATGTGCCACCCAGTCCCTTATTGAACGACAATATCAGCAAGCCTACACACATTCGAAGTTTGCAGAAATACAAATGGAATTCCGCGCGAAGATGAATTGTGCAATCAAAATGGTGGATGTTACTCCATCGGGATGCAACTACGTCGTGCTCCAAGAATTATTGTGGGATGGGAAATCTGCAAACAAATATTATGATGTGCATTATGATGCCAAAAGCGGCATAATATCATGTTCGTGCCAGCTTTTTGAGTTTCGTGGTATCGTCTGCCGACACTGTTTCACGGTCCTTGGCCAAGAGGAAGCAACAACAATATCCACGAAGTATATCATTCCTCGATGGAGCAAACTTATACGAAGGAGATATACTTCAATGAGAGCAGCTTACAACACCCATAGTAAGGACCCAAAAATGCAGAGGTACCGGGCATTGTGCAAGGAATTTTTTCAGATTGCCGATGTTGCATGCGAATCTGATGCTGGAACGGAACAACTATTTAAGCAACTGAGGTGTGGCAGAAACCCGGTGGAGTTGACTTCGTGTGGTGATGGTCGTCATGTTGACACCAGGATGACGTCTTCCTTCCCACCGCCGGATTCGTGTCAGGCATCCATTGTCCGCAGCCCAAATGCAGTAAAGCGAAAGGGAAGGCCTCGTACTCTAAGGTTGAAATCCAAAGTAGAAAAAATTACAAAGAAAAAGAATTCGGTGGTAAAGATGACTGAAATATACACCAACAACACCCCAACACTTAACCACCAGGTGGGGAATGACATGACAGATGTTCATCGTCATATAGAATGGGACTTCAATGTGGCAGTAGTCGGTGATGTTTCATTCAATTCGACCGTTCAGAGCAAAGTCGGTGGCACAACTAGTTCCAATATAGCCGACTGA 2349 0.4253 MWASDVLNPISLEEISLCNNEIEQSEALPHSMPSHTQEDELDEVPTVGMIFETVDKVKDFYKQYAIRCGFGVRVRSSSKGQDNELCFVKLFCSREGNYVSTIPPELKSQPKKTKNCGAKITTIKKGGQWHIKNVILHHNHDLSPMKSRMMRGNKKLNMQVKRTLDMNDEAGVRINKSFQSLVCDVGGFENLPFVERDVRNYIGRQRRALGKEGDGQALMAHFSHMRQMNDEFYFEINFDDNNRISNVFWADARSRAACAEFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLSAEDTETFVWLFNCWHNCMSYKSPDGILTDQCRAMQNAIEIVFPNTRHRWCLWHIMKKIPEKLQGYTHYKTIKNKLKTLVYETVNVHQFETGWQQLINDHELDKNEWLGTLYEERQRWVPCYLKGNFWAGMSTTQRSEGLNAFFDGFINSTTMLQQFVVQYENALRHKAEKECEADFASLNTTIPCATQSLIERQYQQAYTHSKFAEIQMEFRAKMNCAIKMVDVTPSGCNYVVLQELLWDGKSANKYYDVHYDAKSGIISCSCQLFEFRGIVCRHCFTVLGQEEATTISTKYIIPRWSKLIRRRYTSMRAAYNTHSKDPKMQRYRALCKEFFQIADVACESDAGTEQLFKQLRCGRNPVELTSCGDGRHVDTRMTSSFPPPDSCQASIVRSPNAVKRKGRPRTLRLKSKVEKITKKKNSVVKMTEIYTNNTPTLNHQVGNDMTDVHRHIEWDFNVAVVGDVSFNSTVQSKVGGTTSSNIAD 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00509 782 Pfam FAR1 DNA-binding domain 59 143 IPR004330 -
Viun11g00509 782 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 661 IPR031052 GO:0006355
Viun11g00509 782 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Viun11g00509 782 Pfam MULE transposase domain 264 358 IPR018289 -
Viun11g00509 782 Pfam SWIM zinc finger 550 581 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00509 Viun-Chr11 4916582 4919079 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun11g00509 MULE 1.5e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00509 - - vun:114180824 872.848