Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00504 ATGGTTTCTCTCACGGGAAAATCGAGAGTGGGCTCAACTCGAGCCTCTGTGGTCGGTGGTGCTGCCCAATCTCGCCCAAGCGTGGGTGGTAGGAATTTCAAGGTTTTTTCGGAAATTGACCGGACTAAAGCTGGTGATGGGAATACGACTTCTGCCAGAGGAACAGTTGCAAGTTCAAGAAGGAGTACCGTGGTAGCAAGCAAAGGGAATATTCTTGGTAGTACCAGTAATCCAAAGGGTGGTATCAAACAGAGTATGGATAAAAGTAGTGGCAAATATGGTACTTCAAATACAGCTGTGAGAAAGGCATTGTCTGATGTTAGCAATGTTGAAGAAAAGTTCACAGCAGCTCTTGGGCATGCTAACTCAAAAATGAAGGTTTCAACAGGTTCAAGTACAAAAATAGTGGGTGTATCTTTGAGGAAGTCCATCACGGGAAGAGTGCAAAGAAATAATAGTAAAGCTGATGTTCGGTTAGATGCTCTCAATAAAGATGATCAGAAGAATAATACAAAAGGAGGTCAATCAGTTTTTTCCACAAAGGACAGGTTTACATGGAAGACTACAGCTACGAGCACTTCAAGGAAGTCTTTACCGGTACCAAGCAGGGTAATCAGAGAAGATACGAGTAAAACGAAGGAAAATGTTAGAAGTTCTCTAACAGCAAAAGGCCAAAGTTGTCTTCCCTCTAAGGCAACAACAAATAGAAGAGAGAGTTCCCAACTGGTTAATGCAAGAAACCATCTATGGAAGAATCGAGTGAGTGATGGTTTTGTTCTGACGGTTCAGCCTAATGTTTCACATGCATCCTCAAGGAAGTTTGCCAAGCCAATTGTTAAGAACACACTCAAGGCTTCCATTGCGCAAAGGACTTTAAAATCTAAATCCATATCAGCTCAGAGTAAATTAGAATCAATTTTTGCAACGTCATCTCAGAACAAATCCATATCAGCTCAGAACAAATTAGAATCAACTAGTGCAACCTTATCTCAGGAAAAAGAATCAGTTTCTTTGTCTCTTCCTGGGAATGGCTCGACAGTTTCTGATGATGCAAATCAAAGACATCTTCCATCTGAGAGCACTCTAAGAACTGATTTGTCAGAAATTATTCCAAGAAAAAAATCCAGCCGCCGAAAATCATATACAAGTTCATTAATCGAAGGATCTAAGTTTCTCAAGGAAAGTGAAGTTAGAGAGCAAGATAACCTACCCAGTATAGATAATGAAAGCAATCAATTTGAAGTTTCTGAATACGTTGATGACATATATCAGTACTATTGGGTTACTGAGGCACGTAATCCAGCTCTAGCAAATTACATGTCAATTCAGACTGACATCACAGCACATTTGCGGGGCATTTTGATCAACTGGCTCATCGAAGTACACTTCAAATTTGATTTGATGCCAGAAACACTGTATCTCACTATTACGTTACTGGATCAATATCTCTCCCTGGTGACTATCAAAAAGACTGATATGCAGTTAGTTGGTCTTACAGCACTTTTGCTGGCTTCAAAGTATGAGGATTTTTGGCATCCTAGGGTCAAAGATTTAATTAGCATCTCTGCTGGGTATACTAGAGATGAAATGCTTGGAATGGAAAAACTTATTCTTAGAAAATTAAAGTTCCGTCTCAATGCTCCTACTCATTATGTTTTTTTGGTGCGGTTTCTGAAGGCTGGTCAATCAAATAAAAAGATTGAACACATGGCATTCTTTCTGGTTGACCTATGCTTAGTTGAATATGAGGCTTTAGCATTCAAGCCTTCATTACTGTGTGCATCAGCTCTGTATGTAGCACGGTCTACTTTGCAAATATCTCCACCATGGACCCCATTACTTCACAAACATGCGCGTTATGAAGTTTCACAGCTCAGGGATTGTGCGGAAATGATACTCAAGTTCCACAAAGCTGCAGGGGTTGGAAAGTTGACAGTTGCATATGAAAAGTACTCTCGACCACAACTCTGTAGTGTTGCAGCAGTGAAACCTTTGGACGTACTTCCCCTGTGA 2013 0.4049 MVSLTGKSRVGSTRASVVGGAAQSRPSVGGRNFKVFSEIDRTKAGDGNTTSARGTVASSRRSTVVASKGNILGSTSNPKGGIKQSMDKSSGKYGTSNTAVRKALSDVSNVEEKFTAALGHANSKMKVSTGSSTKIVGVSLRKSITGRVQRNNSKADVRLDALNKDDQKNNTKGGQSVFSTKDRFTWKTTATSTSRKSLPVPSRVIREDTSKTKENVRSSLTAKGQSCLPSKATTNRRESSQLVNARNHLWKNRVSDGFVLTVQPNVSHASSRKFAKPIVKNTLKASIAQRTLKSKSISAQSKLESIFATSSQNKSISAQNKLESTSATLSQEKESVSLSLPGNGSTVSDDANQRHLPSESTLRTDLSEIIPRKKSSRRKSYTSSLIEGSKFLKESEVREQDNLPSIDNESNQFEVSEYVDDIYQYYWVTEARNPALANYMSIQTDITAHLRGILINWLIEVHFKFDLMPETLYLTITLLDQYLSLVTIKKTDMQLVGLTALLLASKYEDFWHPRVKDLISISAGYTRDEMLGMEKLILRKLKFRLNAPTHYVFLVRFLKAGQSNKKIEHMAFFLVDLCLVEYEALAFKPSLLCASALYVARSTLQISPPWTPLLHKHARYEVSQLRDCAEMILKFHKAAGVGKLTVAYEKYSRPQLCSVAAVKPLDVLPL 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00504 670 PANTHER CYCLINS 374 652 IPR039361 -
Viun11g00504 670 SMART Cyclin_C_2 548 665 IPR004367 -
Viun11g00504 670 Pfam Cyclin, C-terminal domain 548 663 IPR004367 -
Viun11g00504 670 Gene3D - 436 540 - -
Viun11g00504 670 MobiDBLite consensus disorder prediction 1 20 - -
Viun11g00504 670 MobiDBLite consensus disorder prediction 69 95 - -
Viun11g00504 670 SUPERFAMILY Cyclin-like 410 546 IPR036915 -
Viun11g00504 670 SMART cyclin_7 552 634 IPR013763 -
Viun11g00504 670 SMART cyclin_7 456 539 IPR013763 -
Viun11g00504 670 MobiDBLite consensus disorder prediction 1 29 - -
Viun11g00504 670 FunFam Cyclin N-terminal domain containing 2 436 543 - -
Viun11g00504 670 MobiDBLite consensus disorder prediction 206 240 - -
Viun11g00504 670 MobiDBLite consensus disorder prediction 215 240 - -
Viun11g00504 670 CDD CYCLIN_CCNB1-like_rpt1 415 543 - -
Viun11g00504 670 FunFam putative cyclin-B3-1 isoform X3 544 669 - -
Viun11g00504 670 SUPERFAMILY Cyclin-like 548 667 IPR036915 -
Viun11g00504 670 Pfam Cyclin, N-terminal domain 421 546 IPR006671 -
Viun11g00504 670 Gene3D - 541 668 - -
Viun11g00504 670 MobiDBLite consensus disorder prediction 325 375 - -
Viun11g00504 670 MobiDBLite consensus disorder prediction 325 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00504 Viun-Chr11 4859845 4869454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00504 28 670 Core Cell Cycle Gene Families AT1G16330 45.045 3.73e-160 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00504 K21777 - gmx:100808850 972.615