Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00498 ATGGAAAGAATGTTCCCTCCAAAGAAGCCTTCTACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCAGGCCTTGTCCTCACCACAGACCCTAAACCTCGTCTTCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGACAAGGCCACTCCTAAGACAATCATGAGGGTTATGGGTGTGAAGGGTCTCACTCTTTATCATCTCAAGAGTCACCTTCAGAAATTCAGACTTGGAAAACAGCCCCACAAGGATTTCAATGAACACTCTATTAAGGAAGGCATGAGAGCTTCTGCTTTAGAACTTCAACGAAATATTGGCTCCTCTTCCGCCATGATTGGTCGCAACATGAACGAGATGCAAATGGAAGTGCAAAGAAGACTGCATGAACAACTAGAGAAAAACCTTCAACTGAGGATTGAGGCACAGGGAAAATACATGCAAAGCATATTGGAGAAGGCTTATCACACACTTGCAGGTGAAAACATGGGCACAGGCATGAAGGGTATGGGAGGAGGTCAAGGAAGCAGCAGTGACATGGGTGTGATGAAGGAGTTCTGTTCTCTGAATTACCCTTCTTTTCAAGATCTGAACTTGTATGGTGGTGGTGGTGGTGAAAACCTTGAAGGGTTCATGGCATCAAACACTGAGAGTGTTTTTGAGGGAAAGAAGAGGATTTGCAGCTACAGTGGAAGTGGGAAGAGTCCATTGATTTGGAGTGATGATCTGAGGCTTCAAGATTTGGGAACAACTTCATCATGCATCAGCCCTGAAGAGGAGGACCCTTTCAAAGGGGATCACAATAAGGTTCAGATTTCAGCACCATCAATGGATAGTGACCCCATGTCAGAGATCTATGACACAAAGCCATTGATGGTGCATGGAGAGAGTGTAGGTAACAATAGTCACAAGAAATTTGAAGGTTCTATGAAGCTAGAAAAGCCATCACCACAAAGATCACCACTTCAACCAGAAAGGAATAACAGTCCTATGATCAATGCTACTTCCATGGCACAAGGGTTTTGA 1059 0.4466 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNEHSIKEGMRASALELQRNIGSSSAMIGRNMNEMQMEVQRRLHEQLEKNLQLRIEAQGKYMQSILEKAYHTLAGENMGTGMKGMGGGQGSSSDMGVMKEFCSLNYPSFQDLNLYGGGGGENLEGFMASNTESVFEGKKRICSYSGSGKSPLIWSDDLRLQDLGTTSSCISPEEEDPFKGDHNKVQISAPSMDSDPMSEIYDTKPLMVHGESVGNNSHKKFEGSMKLEKPSPQRSPLQPERNNSPMINATSMAQGF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00498 352 MobiDBLite consensus disorder prediction 1 20 - -
Viun11g00498 352 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Viun11g00498 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 207 IPR044848 GO:0003700
Viun11g00498 352 MobiDBLite consensus disorder prediction 331 352 - -
Viun11g00498 352 MobiDBLite consensus disorder prediction 309 352 - -
Viun11g00498 352 FunFam Myb family transcription factor 34 92 - -
Viun11g00498 352 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Viun11g00498 352 Gene3D - 34 92 - -
Viun11g00498 352 Pfam MYB-CC type transfactor, LHEQLE motif 131 167 IPR025756 -
Viun11g00498 352 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Viun11g00498 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00498 Viun-Chr11 4805979 4810137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00498 4 338 G2-like Transcription Factor Family AT1G79430 55.464 1.59e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun11g00498 Myb_DNA-binding 4.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00498 - - gmx:100796268 546.584