Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00477 ATGAATCAGGCTTATGCAAATTCATCAAATGATTTTGAAAGTCATATCCACAAAGAAAATCAATATACCACTAATCATACTTCCATAAGTGATTACAAAACCAGCCGAGAAAGAGAAATAGAACAAGTTTTTTCTAAACATAATGCAAAAGTGACGAGTAAACCAACATCTAAACCCCATCACGTTCATAACAACAATACTTATGAGTTTTCCACTACTGAGCACCCATCTCCAAGTACAAGAATGTTTTTAAATCACAATCATTCAACCACAACATCACCAAGAACAACAACAGAAGATGCAAGAAATTTTCTTGTACCTGCCAAAAACACCATTCTAGGTGGTCATAGAAGTGGCAGTAGCTCTCGTAGTGACAGTTTAGAGAGCATTAGCATTGCACATACTAAGCCACATACTCCAAGTACAAGAATGTCTTCAAATCACAATCCTTCAACCACAACATCACCAGGAGCAACAACAGAAGATGCAAGGAATTTTCTTGTACCCACAAAAAACACAATTCTAGGTTGCCATAAAAGTGTTAGTAGCTCTCGTAGTGACAGTTTAAAGAGCATAAGCATTGCACATATTAAGCCGCATACTCTAAGTACAAGAATGTCTTCAAATCACTATCCTTCAACCATGACGACACTAGGAGCAACAACAGAAGATGTAAGAAATTTTCTTGTACCTAAAAAAAACACCATTCAAGGTGGTCATAGAAGTGGCAGTAGCTCTCGTAGTGACAGTTTAGATAGCATTTGTTGTGCACATATTAAGCCTCATACTGGAGGTGATGTGAGGTGGGATGCAATTAACATGGTTTCTAATGGTAATGGTCTTGATCTCAGTCATTTCAAGCTTTTAAAGCGTGTTGGATATGGTGATATTGGAAGTGTGTACCTTGTGGAACTTAAAGGAACCAAAGCATTCTTTGCGATGAAAGTAATGGATAAGGCAGCACTTGCTAGTAGAAATAAGCTTTTGAGAGCACAAACAGAAAGAGAAATACTTGGACTTCTTGATCACCCTTTTCTGCCAACTTTATATTCTTATTTTGAGACTGATAAATACTATTGTCTAGTCATGGAGTTTTGTAGCAGTGGTAGTTTGCATTGTCTTCGAATGAAACAACCTAGCAAGCATTTCACTGAAGAAGCTACACGGTTTTATTGTTCTGAAATTTTGTTAGCCTTGGAATACTTGCACATGTTAGGCATTGTGTATAGAGACTTAAAACCAGAAAATGTTCTAGTTCGAGATGAAGGTCACATAATGTTATCAGATTTTGACTTATCTCTTCGATGCTCTGTGAATCCTACACTAGTGAAGTCCTCATCTGCACACGAAAGTAGTAATGGTCCTTATGGAGGCCTTCTAAGTCATGATCAAACAATACATGGTTGCATGCACCACTCAAGTTTCTTTCCACGCATTTTGCCTTCAAAAAAGAATCGTAAGACAAAGTCAGATTTTGGCCTTGTGGTTGGAGGATGCCTCCCTGAACTAATGGCTGAGCCTACAAATGTGAGGTCAATGTCCTTTGTAGGGACACATGAGTATCTTGCACCAGAGATTATTCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACCTTTGGAATCTTTTTGTATGAGCTTTTGCATGGAATAACACCCTTTAAAGGTGCTGGAAATAGAGCGACCCTTTTCAATGTTGTAGGACAACCCTTAAGGTTTCCAGAAAAACCAGTTGTTAGCAAAGTGGCAAGAGACCTTATACAAGGGTTGTTAGTGAAAGAGCCTAAAAAAAGATTTGCTTACAAGAGAGGTGCCACAGAAATAAAGCAACACCCCTTTTTCCATGGAGTGAATTGGGCTCTTGTTAGAAGTGCTACACCTCCAATTATACCAGAACCTTTTGATTTTTCCCCGTACATTAGAAAAACAGATGTTCCACCTATGGATAAAAGGGTTGCAGATATTATTGCAAGTCATAAAAGCAACCATACACAACCAGATTCATCTTATGAAGATTTTGAGTACTTTTAA 2034 0.3825 MNQAYANSSNDFESHIHKENQYTTNHTSISDYKTSREREIEQVFSKHNAKVTSKPTSKPHHVHNNNTYEFSTTEHPSPSTRMFLNHNHSTTTSPRTTTEDARNFLVPAKNTILGGHRSGSSSRSDSLESISIAHTKPHTPSTRMSSNHNPSTTTSPGATTEDARNFLVPTKNTILGCHKSVSSSRSDSLKSISIAHIKPHTLSTRMSSNHYPSTMTTLGATTEDVRNFLVPKKNTIQGGHRSGSSSRSDSLDSICCAHIKPHTGGDVRWDAINMVSNGNGLDLSHFKLLKRVGYGDIGSVYLVELKGTKAFFAMKVMDKAALASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKYYCLVMEFCSSGSLHCLRMKQPSKHFTEEATRFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSAHESSNGPYGGLLSHDQTIHGCMHHSSFFPRILPSKKNRKTKSDFGLVVGGCLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGAGNRATLFNVVGQPLRFPEKPVVSKVARDLIQGLLVKEPKKRFAYKRGATEIKQHPFFHGVNWALVRSATPPIIPEPFDFSPYIRKTDVPPMDKRVADIIASHKSNHTQPDSSYEDFEYF 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00477 677 Gene3D Phosphorylase Kinase; domain 1 284 365 - -
Viun11g00477 677 Pfam Protein kinase domain 287 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00477 677 Pfam Protein kinase domain 509 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00477 677 CDD STKc_phototropin_like 284 634 - -
Viun11g00477 677 SMART serkin_6 286 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00477 677 FunFam Serine/threonine-protein kinase AGC1-7 508 633 - -
Viun11g00477 677 ProSiteProfiles AGC-kinase C-terminal domain profile. 616 677 IPR000961 GO:0004674|GO:0005524|GO:0006468
Viun11g00477 677 PANTHER FLIPPASE KINASE 1-RELATED 57 637 - -
Viun11g00477 677 SUPERFAMILY Protein kinase-like (PK-like) 283 644 IPR011009 -
Viun11g00477 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Viun11g00477 677 Gene3D Transferase(Phosphotransferase) domain 1 491 633 - -
Viun11g00477 677 FunFam Serine/threonine-protein kinase D6PK-like 284 369 - -
Viun11g00477 677 Gene3D Transferase(Phosphotransferase) domain 1 366 435 - -
Viun11g00477 677 ProSiteProfiles Protein kinase domain profile. 286 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00477 677 FunFam serine/threonine-protein kinase D6PK-like 370 437 - -
Viun11g00477 677 MobiDBLite consensus disorder prediction 134 161 - -
Viun11g00477 677 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00477 Viun-Chr11 4592919 4596003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00477 260 677 AGC Kinase Gene Family AT1G79250 70.136 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun11g00477 Pkinase 8.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00477 - - vun:114169466 1321.22