Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00476 ATGGAAAACCACATCTACTCCTCCTACAGCCCTTCCACCAACTACCGATTCCGCGACTCCGACTCCTCAACCATGTTCCTCTCCCACCACCACCACCGCGCCGCCGACTCCACCGCCCTCCGCTTCTCCTCCTCACTCGCCGACGACATTGCCCCGCCCGGTGTTACCTCCCGCATCGTCTCCTCCTCCGCCGCCAACTACCTCTCCCCCTGGGCCTCCTCCGCCGCCACCTCCTCCCTCGACTTCAAACGCTCCTCCGACGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAGAAAGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGGTTGGGTTCCTGAGGGTGGAATCCGGGATTGGAAAGAGGTTCCAAATGTTGTTATAAGTGAAACTCCTCCTGAGAGACCAGGGGTACCAGATTGTCCATTCTTTCTGAAAACTCAGAGATGCAAGTTTGGTTCAAAGTGCAAATTTAATCATCCTAAGGTTTCCTCTGAAAATGATGATGTAACTTCTGGCTTACCTGACAGGCCATCAGAGCCCCCATGCTCGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTTCTTGTAAATTCCATCACCCCAAGGATATCCAGATTCAGTCGTCTGATGAGTTGAGTCATACTGCTGCACAGACAGAAATAAATTCTATGATAGGAGGAGCCCTTGGAGATACACAACCAATTAAGTCTCTTATATCTCCATCATTGCAAAATAGCAAAGGACTTCCAGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGTAAGTACGGTGCCACTTGCCGCTACAATCATCCTGATAGGAATGCAATTAATCCACCCATTGCTGGATTAGGCGCTTCTATTTTTCCATCCTCAGCTACTAGTCTGAATATTGGACTTCTCAGTCCAGCTATGTCTGTTTATCAAGGTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAAACCATCTATCCTCAACGACCTGGCCAGATCGAATGTGATTTTTACATGAAAACTGGCGACTGTAAATTCGGTGAAAGATGCAAGTATCATCACCCAATTGATCGCTCAGCACCATCACTGTCAAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGATTACCAAGAAGAGAGGGTGCTGTTATTTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCGACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTGTGGAGATGGCAAAATCTCAAGGAACATCAGCCGATGGAGGGGAAGCAGAAGACTGA 1455 0.477 MENHIYSSYSPSTNYRFRDSDSSTMFLSHHHHRAADSTALRFSSSLADDIAPPGVTSRIVSSSAANYLSPWASSAATSSLDFKRSSDALYHPTILGTIGQSEAWYSTNSLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPGWVPEGGIRDWKEVPNVVISETPPERPGVPDCPFFLKTQRCKFGSKCKFNHPKVSSENDDVTSGLPDRPSEPPCSFYMKTGKCKFGASCKFHHPKDIQIQSSDELSHTAAQTEINSMIGGALGDTQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPPIAGLGASIFPSSATSLNIGLLSPAMSVYQGFDPRLSNPMSQVGIAETIYPQRPGQIECDFYMKTGDCKFGERCKYHHPIDRSAPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVVEMAKSQGTSADGGEAED 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00476 484 SUPERFAMILY CCCH zinc finger 128 154 IPR036855 GO:0046872
Viun11g00476 484 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Viun11g00476 484 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Viun11g00476 484 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Viun11g00476 484 PANTHER PROTEIN PHOSPHATASE RELATED 287 471 - -
Viun11g00476 484 SUPERFAMILY CCCH zinc finger 226 250 IPR036855 GO:0046872
Viun11g00476 484 FunFam Zinc finger CCCH domain-containing protein 37 87 165 - -
Viun11g00476 484 SUPERFAMILY CCCH zinc finger 439 462 IPR036855 GO:0046872
Viun11g00476 484 Gene3D - 220 334 - -
Viun11g00476 484 SUPERFAMILY CCCH zinc finger 185 206 IPR036855 GO:0046872
Viun11g00476 484 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Viun11g00476 484 Gene3D - 383 477 - -
Viun11g00476 484 ProSiteProfiles Zinc finger C3H1-type profile. 180 208 IPR000571 GO:0046872
Viun11g00476 484 FunFam Zinc finger CCCH domain-containing protein 37 166 213 - -
Viun11g00476 484 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Viun11g00476 484 Gene3D - 86 166 - -
Viun11g00476 484 Gene3D - 167 214 - -
Viun11g00476 484 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Viun11g00476 484 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Viun11g00476 484 SMART c3hfinal6 222 249 IPR000571 GO:0046872
Viun11g00476 484 SMART c3hfinal6 180 207 IPR000571 GO:0046872
Viun11g00476 484 SMART c3hfinal6 385 412 IPR000571 GO:0046872
Viun11g00476 484 SMART c3hfinal6 435 462 IPR000571 GO:0046872
Viun11g00476 484 SUPERFAMILY CCCH zinc finger 387 413 IPR036855 GO:0046872
Viun11g00476 484 SUPERFAMILY CCCH zinc finger 303 326 IPR036855 GO:0046872
Viun11g00476 484 FunFam zinc finger CCCH domain-containing protein 37 383 476 - -
Viun11g00476 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 439 462 IPR000571 GO:0046872
Viun11g00476 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 249 IPR000571 GO:0046872
Viun11g00476 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 207 IPR000571 GO:0046872
Viun11g00476 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 388 411 IPR000571 GO:0046872
Viun11g00476 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 325 IPR000571 GO:0046872
Viun11g00476 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 154 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00476 Viun-Chr11 4552814 4565688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00476 284 477 C2H2 Transcription Factor Family AT3G02830 34.872 7.45e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun11g00476 zf-CCCH 1.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00476 - - pvu:PHAVU_011G180700g 960.674