Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00468 ATGTGGTCACTCACTTACAGGGGCAATTCAATTCAACCCCCACAAGGGTTTGCACCAGCACCAATACCAAGACCAAGACCACCACCACCACCAACTTCTTCTGCTGTTTCTTCTTTTGCCTTGGAATTATTCAAACTCATCACCATGCCATTTTACACTGGCAAAAAGTTCTTCAAGAGATTCTGTGTTGACGAGTTTCAAATGGCAAGTCTTCCATATAGCAGCTTTCTGTCCAATGACCTCTTGCCATCCCTTGGAGCCAGAATCAACCAAGAAACAAGGCTTAGAAGATGCACAGTTTCCCCTTTCGATCCACGTTACAGGGCATGGGAGATGCTGCTGATTGTCCTTGTTGTTTACTCTGCATGGATTTGCCCATTTGAGTTTGCCTTTCTCCCTCAAAAGCAAGACACACTGTTCATCATAGACAACATCGTCAATGCCTTCTTTGCCATTGACATCGTTCTCACCTTCTTTGTTGCTTATCTCGATAACCATTCCTACCTTCTCGTTGATAATCCAAAGAAAATTGCATTAAGGTACATATCCACCTGGTTCATCTTCGATGTGTGTTCGACTGCACCATTTGAATCCATCAGCCTCCTATTCACTGATCACAAAAGTGAAATTGGGTTCAAAATTCTGAACATGCTTAGGTTGTGGCGCCTCAGACGTGTCAGTTCTCTGTTTGCAAGACTTGAGAAGGACATTCGCTTCAATTACTTCTGGACCAGGTGTTCCAAACTCATCGCTGTGACATTGTTTGTGGCGCACTGTGCTGGGTGCTTCAACTATCTGATAGCAGATAGGTATCCTGATCCAAAATTAACATGGATTGGTTCTGTGTTCCCAAATTTCAAAGAAGAGAGTCTGTGGGACAGATACGTGACTTCCTTGTATTGGTCCATTGTCACACTTACAACCACTGGTTATGGAGATTTGCATGCTGCAAACCCAAGGGAGATGCTGTTTTTCATCTTCTACATTTTGTTGAACTTGGGATTAACTTCATACATCATCGGAAACATGACAAACTTAGTTGTCCATTGGACAAGCCGCACCAGAAACTTTAGGGACACAGTGAGAGCAGCTTCTGAATTTGCATCAAGAAACCATCTGCCACATCACATACAGGAACAGATGTTGTCACACTTGTGTTTGAAGTTCAAAACAGAAGGAGTGAAGCAGCAAGAGACACTGAGTGGCATGCCAAAAGCAATCCGTGCAAGCATTGCACACCATCTCTTTTTCCCTGTTCTGCAGAGACTCTACCTCTTCCAAGGAGTATCACATGATTTTCTTTTCCAACTGGTTACTGAGATGGAAGCTGTGTATTTCCCACCAAAGGAAGATGTGATACTCCAAAATGAGTCTCCCACAGACCTCTACATACTGGTTTCAGGGGCAGTGGATATCATTCGCTATGTTGATGGCAATGAGGAAGTTCTGAATAAGGCTATTGCAGAGGACATATTTGGAGAGATTGGAGTGTTGTACTGTAGACCACAGCCTTTCACTGTTCGGACCACTGAACTTTCTCAGATTCTAAGACTCAGCAGAAGTTCCTTAATGAACTCCTTACAGGCATACCCAGATGCTGCACAAATCATAATGAAAAATCTCTTCATGAGGCTAAAGGGGCATGAAGGTTTGGATTTTGAATATTCACAAAGGGAACCCCAAATGCATGATATGGATAACACAGAAGCAAGTGTTCCTGATTCATCTGCAAGTAATTCCCATGGTGAAACCAGATTGCATATTCCTGAGGATGGAAAGAGAGATTTTGATGCTACTTTTCATAAAGATCATGATGAAATGGATGAAAATGAGAAGAGCCAAGGCCCTATAAGATGGAAACAGAAGTCTGTTGTAGATCAGAAACAAAACAAGAGCCTTTGTGAGCTTGCAGTGAACCATGAAAATAGGAAGATATTAGATGAACATATTATAGACTTTTTGCAGCCAGAAATCCCTTTAAACTACCCTTTAGGAAAAAGATACTCAAACTCTTGTTCAAGTGCTTCTAACAACAGAACTGAGAGAGAAACAGATAGATTCTTCAAAAAGAGAGTTGTCATCCACTTTCTAAGCAAACACAGAACCAGCTTACAGGAACATGGCAAGTTGATAATGCTACCAGATTCATTACAAGAGCTGTTTCACATTGCAGGAGAAAAATTTGGAGTCTCGAAGCTTACGAAAGTAATTACCATAGAGAATGCAGAGATAGATGATATTAGTGTCATTCGAGATGGTGATCATCTCTTTTTTGTTAGCAGTGACACTGAAAATTGA 2298 0.416 MWSLTYRGNSIQPPQGFAPAPIPRPRPPPPPTSSAVSSFALELFKLITMPFYTGKKFFKRFCVDEFQMASLPYSSFLSNDLLPSLGARINQETRLRRCTVSPFDPRYRAWEMLLIVLVVYSAWICPFEFAFLPQKQDTLFIIDNIVNAFFAIDIVLTFFVAYLDNHSYLLVDNPKKIALRYISTWFIFDVCSTAPFESISLLFTDHKSEIGFKILNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCSKLIAVTLFVAHCAGCFNYLIADRYPDPKLTWIGSVFPNFKEESLWDRYVTSLYWSIVTLTTTGYGDLHAANPREMLFFIFYILLNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQEQMLSHLCLKFKTEGVKQQETLSGMPKAIRASIAHHLFFPVLQRLYLFQGVSHDFLFQLVTEMEAVYFPPKEDVILQNESPTDLYILVSGAVDIIRYVDGNEEVLNKAIAEDIFGEIGVLYCRPQPFTVRTTELSQILRLSRSSLMNSLQAYPDAAQIIMKNLFMRLKGHEGLDFEYSQREPQMHDMDNTEASVPDSSASNSHGETRLHIPEDGKRDFDATFHKDHDEMDENEKSQGPIRWKQKSVVDQKQNKSLCELAVNHENRKILDEHIIDFLQPEIPLNYPLGKRYSNSCSSASNNRTERETDRFFKKRVVIHFLSKHRTSLQEHGKLIMLPDSLQELFHIAGEKFGVSKLTKVITIENAEIDDISVIRDGDHLFFVSSDTEN 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00468 765 PRINTS EAG/ELK/ERG potassium channel family signature 154 163 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun11g00468 765 PRINTS EAG/ELK/ERG potassium channel family signature 295 312 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun11g00468 765 PRINTS EAG/ELK/ERG potassium channel family signature 143 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun11g00468 765 PRINTS EAG/ELK/ERG potassium channel family signature 120 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun11g00468 765 PRINTS EAG/ELK/ERG potassium channel family signature 321 332 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun11g00468 765 PRINTS EAG/ELK/ERG potassium channel family signature 339 348 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun11g00468 765 ProSiteProfiles cAMP/cGMP binding motif profile. 425 544 IPR000595 -
Viun11g00468 765 PANTHER POTASSIUM CHANNEL AKT1 74 566 IPR045319 GO:0005249|GO:0006813
Viun11g00468 765 SUPERFAMILY Voltage-gated potassium channels 102 347 - -
Viun11g00468 765 Gene3D Jelly Rolls 418 550 IPR014710 -
Viun11g00468 765 MobiDBLite consensus disorder prediction 565 589 - -
Viun11g00468 765 FunFam Potassium channel KAT3 109 349 - -
Viun11g00468 765 Gene3D Helix hairpin bin 349 415 - -
Viun11g00468 765 ProSiteProfiles KHA domain profile. 691 765 IPR021789 -
Viun11g00468 765 SMART cnmp_10 425 542 IPR000595 -
Viun11g00468 765 Pfam Cyclic nucleotide-binding domain 444 528 IPR000595 -
Viun11g00468 765 MobiDBLite consensus disorder prediction 16 33 - -
Viun11g00468 765 SUPERFAMILY cAMP-binding domain-like 352 545 IPR018490 -
Viun11g00468 765 MobiDBLite consensus disorder prediction 1 33 - -
Viun11g00468 765 Pfam Ion transport protein 108 354 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun11g00468 765 CDD CAP_ED 425 538 IPR000595 -
Viun11g00468 765 FunFam Potassium channel KAT2 413 549 - -
Viun11g00468 765 MobiDBLite consensus disorder prediction 568 583 - -
Viun11g00468 765 Pfam KHA, dimerisation domain of potassium ion channel 690 758 IPR021789 -
Viun11g00468 765 Gene3D - 108 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00468 Viun-Chr11 4436084 4443019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00468 55 761 Ion Channels AT5G46240 59.198 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00468 K21867 - gmx:100800340 1203.73