Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00403 ATGAAGAGGTCTCCATCATCTTCTTGTTCATCATCTTCTGAAGCTTCCATTGCTGAGCAAGAAAAGAAAAGACCTAATTATGAAAAGAAGAACAACTTGAAGTCACAGAAATGCAAGCAGAACCAAACCACTTGCAGAAGAAGCTCTGTCTATAGAGGAGTTACAAGACATAGGTGGACAGGTAGGTTTGAAGCTCACCTATGGGATAAGAGCTCATGGAACAACATTCAGAGCAAGAAGGGTAAACAAGTTTATTTGGGAGCATACGATACTGAAGAAGCTGCAGCACGTACCTATGATCTCGCAGCCCTGAAGTACTGGGGAAAAGAAGCAGTTCTGAATTTTCCGATAGAAAATTATGCAAAGGATCTTGAGGAAATGGACAAAGTCTCAAAAGAAGAATATTTAGCTTCTTTGCGGCGCCAAAGCAGTGGTTTTTCTAGAGGCATTTCTAAGTATCGTGGGGTTGCTAGGCATCATCATAATGGGCGGTGGGAAGCACGCATTGGGAGAGTGTGCGGAAACAAGTACCTTTACTTGGGAACATATAAAACTCAGGAGGAGGCAGCTGTGGCATATGACTTAGCAGCAATAGAGTACAGAGGAGTGAATGCAGTGACCAATTTTGACATAAACAACTACATTGACAAAGAGAAAAAGGACCAAACTCAAGAAACAGTAGTACAAACAGTACAAACAGAAACAGCAGTTCCCAACTCCTCATACTTAGAAGAAGCAGAAGTAGAACAACAACAACTGAACACAACTACACCACCCCCTATTGAGAATCTGCACATGCCACCACTGCAGCAATACAACCAAGTTCCACACACACCCTTTGTGTATCCCAGGGAAGAGTCATCATCAGTGGTGAATATCATGGACCATGTGCTTGAACAGGATCTGCCATGGAGCTTCATGTACACTGGGGTGTCTAAGTTTCAAGATCCAGACTTTGCTTTCAGCAAAGCTGAGGATTTGGCAGCCATGTTTTGTGATGATTCAGAGTTTGAGGAAGACATTGATTCTCTGTTTAGCACAAAGCCTAATCGTGAGACGGATGAGGGTGGTGGAAACATGGTGCATGGGGATAACAAGCAGAAGGAGATACTATCTTTTGAATCTTCTTCTCCATCGTCTACAACAACTTCACTTTCTTGTAACTATGCTTAG 1173 0.4271 MKRSPSSSCSSSSEASIAEQEKKRPNYEKKNNLKSQKCKQNQTTCRRSSVYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGKQVYLGAYDTEEAAARTYDLAALKYWGKEAVLNFPIENYAKDLEEMDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDLAAIEYRGVNAVTNFDINNYIDKEKKDQTQETVVQTVQTETAVPNSSYLEEAEVEQQQLNTTTPPPIENLHMPPLQQYNQVPHTPFVYPREESSSVVNIMDHVLEQDLPWSFMYTGVSKFQDPDFAFSKAEDLAAMFCDDSEFEEDIDSLFSTKPNRETDEGGGNMVHGDNKQKEILSFESSSPSSTTTSLSCNYA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00403 390 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Viun11g00403 390 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700|GO:0006355
Viun11g00403 390 PRINTS Ethylene responsive element binding protein signature 98 118 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 FunFam AP2-like ethylene-responsive transcription factor 151 212 - -
Viun11g00403 390 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 Pfam AP2 domain 49 108 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 MobiDBLite consensus disorder prediction 371 390 - -
Viun11g00403 390 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Viun11g00403 390 MobiDBLite consensus disorder prediction 1 39 - -
Viun11g00403 390 CDD AP2 49 117 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 270 - -
Viun11g00403 390 MobiDBLite consensus disorder prediction 17 35 - -
Viun11g00403 390 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Viun11g00403 390 FunFam AP2-like ethylene-responsive transcription factor 49 118 - -
Viun11g00403 390 MobiDBLite consensus disorder prediction 1 16 - -
Viun11g00403 390 SUPERFAMILY DNA-binding domain 49 118 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00403 Viun-Chr11 3562718 3568630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00403 10 214 AP2-EREBP Transcription Factor Family AT5G57390 59.512 7.53e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Viun11g00403 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00403 - - gmx:100527432 539.65