Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00400 ATGAACGTTGAGGCAGTAGATGAAGGGGAAAACAGTGATAGACCAGCTTCTGAAAATGTTGAAACTGAAAAAGATGAGGAACAAAATATGAAAGTAAACTTGGCTGAAAGAGAAGTAAATAGCCAGGATGGTGATGCTTATAGGAAACCACTTGTGGGCATGCTGTTTGAATCTGAAGATTTTGCAAAATCATTTTATGATGCATATGCAAGAGATGTAGGATTTAGCACACATGTTGGTCAATTCTACCGTGCTAAGCCTGATGGTCCAATTATAACTTGGGACTTTGCTTGTTCCAGAGAGGTATTTAAAAGGAAGAACATAGTAAGTTGCAATGCAATGCTTAGGGTAGAGAGAAAAGATGCAAACTGGATAGTGACGAAATTTGTTGAGGACCATAACCATTCCCTTGCTTCCTCTAGAAAGGTGCAGAACCGTCAACCCAGTAGACATTATGTAGGTGCTGCAAGGAATGTTATAGCGACATTTGATGCCCGGAATGAATCTTGTGCCTTGAATGGAAATCATTTAGATCCCATTAGTTCAGTTAGGAACTCCTTTCCAGCAGAAAAATGTCATCCAATGAGAAACATTGGGTCGCTTACCTATGCAAGATCTTCTCAAAAGAGGACTCTTGGAAGAGATGCTCAAAATCTTCTGAATTATTTTAAGAAGATGCAGGGTGAAAACCCTGGCTTCTATTATGCAATACAACTAGATGATGAAAACCGCATGACCAATGCATTCTGGGCGGATGCAAGGTCAAGAACAGCTTATAATTACTTTGGTGATGCTGTGATTTTTGACACAATGTATAGACCAAATCAATACCAAATCCCATTTGCTCCATTTACAGGATTCAATCACCACGGCCAGATGGTTTTATTTGGTTGTTCATTACTGCTAGACGAATCAGAGTCTTCCTTTACATGGCTATTCAAGACATGGCTATCTGCTATGAATGATCGACCACCTGTTTCCATAACCACAGACCAAGATAGAGCCATACAAGCAGCCGTTTCTCATGTGTTCCCAGAAACTCGCCATTGTATTTGTAAGTGGCACATTTTAAGAGAAGGTCAAGAAAGATTGACTCATATTTACCTTGCTCATCCTTCGTTCTATGGTGATCTATATGGCTGTATCAATTTTTCTGAGACTACTGAGGATTTTGAATCAACATGGAAGTCTCTTCTTGATAAATATGATCTCCAGAAAAATGATTGGCTTCAGGCAGTATATAATGCTCGTAAACAATGGGCCCCTGTTTACTTTCGTGATACTTTCTTTGGTGCTATTACTTCAAACCACGGGGTAAACTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATACCTTTATTCTTTAGGCAGTATGAAATATCACTTGAACATTCATTGGAAAGAGAAGTAGAAGCAGATTATGAGACTATTTGTAACACGCCAGTACTGAGGACTCCATCACCAATGGAACAACAGGCAGCAAATATGTACACTAACAAGATTTTTGCAAAGTTTCAGGAGGAACTGGTGGAAACTTTTGCATATACTGCAAATAATGTTGAAAATGATGGTGTTATCAGTAAATACAGGGTTGCAAAATATGAACATGATCACAAGGCATACATGGTCACATTAAATATGTCTGAAATGAAGGCAAACTGCAGCTGTCAGATGTTTGAATACTCTGGCATTCTTTGTCGACATGTATTGACTGTTTTCACTGTAACAAATGTCCTTACCCTTCCATCACACTACATTTTAAAGCGATGGACAAAGAATGCAAAATCTGGTATTGGAACTGATGAAAAAACAACAGGTCCACTTAACATTGAAAATCTCACTATACGTTTTAATAGTTTATGTCGAGAAGCCATTAAGCTTGCTGAAGAAGGGGCAATTGCCGTTGAGACTTATAATGTTGCAATGAATGCTCTGAGAGAGGGTGCTAAAAGGGTAGGTGTTATGAAGAAAAATATTGCAAAAGTCAAACCTCCAAACACTCAGGGTAATGGATGCTGTCAGGAAGACAATAGCAAGAAGAGCCCTTCATCAATTTCAGATGTCATCCCATCACTGTGGCCTTGGCTAGATTCAGTGTCAAATCACTTGAATCATAGCGGCCTTGGGCTTCCTGTTACTGATCTGAATCATCCTAGTATGGCTCCTGTTTCTATTCACCAGGATGGTGGCCCTCCAGATAATTCTGTTGTCCTCATGTGTTTCAAGTCTATGACTTGGATCATCGAAAATAAGAATTCAAGCCAATCTAGTAAAATTGCAGTTATTAACATGAAGCTGCAAGATTATGGAAAGAGCCCTTTAGGAGAGACAGAAGTGCAATTCAGGGTGACAAGGGTAACTTTGGAGCCTATGTTGAGATCAATGACTTACATTAGTCATCAGCTAAATGCACCAGTCAATAGAGTTGCCGTCATCAATCTGAGGCTCCAGGATACGAAGACAACTACTGGGCAAACTGAGGTGAAATTCCAAGTTTCTAGAGATACTCTCGGCTCCATGCTGAGATCTATGGCCTACATCCGGGAGCAGCTCTAG 2562 0.3973 MNVEAVDEGENSDRPASENVETEKDEEQNMKVNLAEREVNSQDGDAYRKPLVGMLFESEDFAKSFYDAYARDVGFSTHVGQFYRAKPDGPIITWDFACSREVFKRKNIVSCNAMLRVERKDANWIVTKFVEDHNHSLASSRKVQNRQPSRHYVGAARNVIATFDARNESCALNGNHLDPISSVRNSFPAEKCHPMRNIGSLTYARSSQKRTLGRDAQNLLNYFKKMQGENPGFYYAIQLDDENRMTNAFWADARSRTAYNYFGDAVIFDTMYRPNQYQIPFAPFTGFNHHGQMVLFGCSLLLDESESSFTWLFKTWLSAMNDRPPVSITTDQDRAIQAAVSHVFPETRHCICKWHILREGQERLTHIYLAHPSFYGDLYGCINFSETTEDFESTWKSLLDKYDLQKNDWLQAVYNARKQWAPVYFRDTFFGAITSNHGVNSFFDGYVNQQTTIPLFFRQYEISLEHSLEREVEADYETICNTPVLRTPSPMEQQAANMYTNKIFAKFQEELVETFAYTANNVENDGVISKYRVAKYEHDHKAYMVTLNMSEMKANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTKNAKSGIGTDEKTTGPLNIENLTIRFNSLCREAIKLAEEGAIAVETYNVAMNALREGAKRVGVMKKNIAKVKPPNTQGNGCCQEDNSKKSPSSISDVIPSLWPWLDSVSNHLNHSGLGLPVTDLNHPSMAPVSIHQDGGPPDNSVVLMCFKSMTWIIENKNSSQSSKIAVINMKLQDYGKSPLGETEVQFRVTRVTLEPMLRSMTYISHQLNAPVNRVAVINLRLQDTKTTTGQTEVKFQVSRDTLGSMLRSMAYIREQL 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00400 853 MobiDBLite consensus disorder prediction 7 32 - -
Viun11g00400 853 Pfam SWIM zinc finger 545 577 IPR007527 GO:0008270
Viun11g00400 853 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 654 IPR031052 GO:0006355
Viun11g00400 853 Coils Coil 17 37 - -
Viun11g00400 853 SMART 26again6 554 581 IPR006564 GO:0008270
Viun11g00400 853 Pfam FAR1 DNA-binding domain 64 138 IPR004330 -
Viun11g00400 853 MobiDBLite consensus disorder prediction 1 32 - -
Viun11g00400 853 MobiDBLite consensus disorder prediction 666 685 - -
Viun11g00400 853 ProSiteProfiles Zinc finger SWIM-type profile. 543 579 IPR007527 GO:0008270
Viun11g00400 853 Pfam MULE transposase domain 266 358 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00400 Viun-Chr11 3540742 3552316 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun11g00400 MULE 6.8e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00400 - - gmx:100789242 1563.13