Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00397 ATGGGGCATGAAGCAAGAACACTCTCGGATGAGTATGAAGTCTCAGATGTTCTAGGCAGAGGTGGATTTTCTGTTGTCAGAAAAGGCACAAGAAAATCAAGCAGTGACACCAAAAGCCATGTGGCCATCAAAACCCTGAGAAGATCAGGCACTGCCTCAAACTCCAACCACCCTTCTGGGTTTGCAAAAGCAAAGGGTGCTATGATGGGGTTCCCCTCTTTGAGACAGGTCTCGGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAACGTTTCACCACACCCTAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGAGTGCACCTTGTGTTGGAGCTGTGTTCTGGTGGGGAACTGTTTGATAGGATTGTAGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGCCAGATAGCTTCAGGATTGGAGGCTATTCATAGAGCTAACATTGTGCACAGAGACTTGAAGCCTGAGAACTGTCTTTTCTTGGATGTGAGGAGGGATTCTCCTCTTAAGATCATGGACTTTGGTTTGAGTTCTGTTGAAGAATTCACCGACCCAGTTGTTGGTTTGTTTGGATCCATCGATTATGTCTCACCAGAGGCTCTTTCTCAAGGAAAGATAACTACCAAGAGTGACATGTGGTCTCTTGGGGTGATTCTATACATCTTACTCTCTGGGTATCCACCTTTCATTGCTCAGTCTAATCGCCAGAAACAACAAATGATAATGAATGGGACTTTCAGTTTCTATGAGAAGACATGGAAGGGCATTACTCAATCAGCAAAGCAATTAATTTCAGATCTTCTGACAGTAGATCCTAGCAGGAGACCTAGTGCTCAAGATCTTCTGAGTCATCCATGGGTGGTAGGTGACAAGGCCAAGGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCAGAGCTTCAACGCAAGACGCAAACTGCGTGCAGCTGCAATTGCTAGTGTTTGGAGTTCCACAATCTTCCTCAGAACCAAAAAGCTGAAATCTTTGGTGGGAACACATGATCTCACAGAAGAGGAAATTGAAAACCTCAGGATTAATTTTAAGAAAATATGTGTGAGTGGAGACAGTGCCACTCTAAGTGAGTTTGAAGAGGTGCTGAAAGCCATGAATAGGCCATCACTGGTCCCTCTAGCACCACGAATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATTCTGTGTGGCTTTTCAAGCTTCAAAAACTCCAAAGGAGATGATGCTCTTCGTTTGTGCTTCCAGATGTATGACACAGATCGATCAGGGTGCATCACCAAGGAAGAAGTAGCATCCATGTTCAGAGCTTTACCAGAAGAGTGTCTGCCAGCTGATATCACTGAACCTGGGAAATTGGATGAGATATTTGACAGAATGGATGCAAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCCATGCAGATAGATAGCTCTCTTCAAGACCTTCTTCTCTCTTCTCTAAGACCACAATCTTAG 1566 0.4425 MGHEARTLSDEYEVSDVLGRGGFSVVRKGTRKSSSDTKSHVAIKTLRRSGTASNSNHPSGFAKAKGAMMGFPSLRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGTFSFYEKTWKGITQSAKQLISDLLTVDPSRRPSAQDLLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGTHDLTEEEIENLRINFKKICVSGDSATLSEFEEVLKAMNRPSLVPLAPRIFDLFDNNRDGTVDMREILCGFSSFKNSKGDDALRLCFQMYDTDRSGCITKEEVASMFRALPEECLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQIDSSLQDLLLSSLRPQS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00397 521 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 345 514 - -
Viun11g00397 521 SUPERFAMILY EF-hand 347 511 IPR011992 -
Viun11g00397 521 Coils Coil 349 369 - -
Viun11g00397 521 CDD STKc_CAMK 12 301 - -
Viun11g00397 521 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 isoform A 3 57 - -
Viun11g00397 521 Gene3D Phosphorylase Kinase; domain 1 15 129 - -
Viun11g00397 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Viun11g00397 521 Gene3D - 346 514 - -
Viun11g00397 521 Pfam Protein kinase domain 12 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00397 521 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Viun11g00397 521 Pfam EF hand 405 420 IPR002048 GO:0005509
Viun11g00397 521 CDD EFh 403 462 IPR002048 GO:0005509
Viun11g00397 521 SUPERFAMILY Protein kinase-like (PK-like) 6 319 IPR011009 -
Viun11g00397 521 Gene3D Transferase(Phosphotransferase) domain 1 130 345 - -
Viun11g00397 521 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Viun11g00397 521 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Viun11g00397 521 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Viun11g00397 521 CDD EFh 437 504 IPR002048 GO:0005509
Viun11g00397 521 SMART serkin_6 12 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00397 521 SMART efh_1 436 464 IPR002048 GO:0005509
Viun11g00397 521 SMART efh_1 478 506 IPR002048 GO:0005509
Viun11g00397 521 SMART efh_1 400 428 IPR002048 GO:0005509
Viun11g00397 521 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Viun11g00397 521 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Viun11g00397 521 Pfam EF-hand domain pair 435 504 IPR002048 GO:0005509
Viun11g00397 521 ProSiteProfiles EF-hand calcium-binding domain profile. 403 431 IPR002048 GO:0005509
Viun11g00397 521 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 129 319 - -
Viun11g00397 521 ProSiteProfiles Protein kinase domain profile. 12 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00397 521 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 70 128 - -
Viun11g00397 521 PRINTS Recoverin family signature 404 425 - -
Viun11g00397 521 PRINTS Recoverin family signature 358 377 - -
Viun11g00397 521 PRINTS Recoverin family signature 428 447 - -
Viun11g00397 521 PRINTS Recoverin family signature 494 514 - -
Viun11g00397 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00397 Viun-Chr11 3503313 3509106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00397 3 504 EF-hand Containing Proteins AT5G23580 33.004 1.35e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Viun11g00397 Pkinase 3.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00397 K13412 - gmx:732616 938.332