Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00378 ATGTTTTCCCCACCAATCTCCCTTCTTTTCCTCTTCTTCCTCTTTCTTCCATTACTCTTAGCTCAAACTGCATCACCATCACCATCCCCAACACATGCTACTCATTCTCCTTCTCCATCACCATCAAAACATGCTCCTTCTCCATCACCATCTTCAACTCATGCTCCTTCTCCATCACCATCAAAACATGCTCCTTCTCCATCACCATCTCCAACTCATGCTCCTTCTCCTTCTCCGTCTCCATCACCATCTCCAACAACTGCTCCTCCTCCTCCACCACCTCTTCCACCAACTTCACCCTCTGCAGCATGCAAGGCCACATTATATCCAAAACTGTGCCGTTCCCTTCTCTCATCCATTCGAGCTTCACCTTCTGACCCTTACAACTTGGGAAAATTCTCCATCAAACAGAGCCTCAAGCAAGCCAAGAAACTGGCCAAAGTCTTCTCCAATTTCCTCAAAAAGCACCAATCTTCTTCTCTCAGCAGCGCAGAGATCGCAGCCCTAGAAGACTGCAGTGAGCTGAGCCAGCTAAGTGTTGGGTACCTGGAGTCGGTTTCAGAAGAGCTGAAATCTGCAGACCCCTCCAACACAGAGTTGGTAGAAAAGATCGAAACATATCTCAGTGCTGTGGCCACCAACCACTACACTTGCTATGATGGGTTGGTGCTGATCAAGAGCAACATTGTCAACACTCTCGCTGTGCCTCTCAACAATGTCACACAACTCTATAGTGTGTCTCTTGGGTTGGTCACGCAGGCTCTGAAGAAGAATCAGAAGAAGCATAAGACTCGCAAACATGGTCTTCCCACCCAGAATAACAAGGTCAGACAGCCACTGAAGAAGCTCATTAAGCTTCTTCACACAAAGCACAGTTGCGAAGCACCATCCAATTGCAGCACTAGAAGTGAAAGGATTCTTAAAGAAAGTGAGAGCAAGGGAATTCTGCTTAAGGAGTTTGTGATTGTGAACCTTAATGGCACAGACAACTTCACCTCCATTGGAGAGGCTATTGCTGCTGCACCAGATAACTTAAGGCCAGAAGATGGCTATTTCCTTATCTATGCAAAAGAAGGATCCTATGAGGAATATGTCACTGTTCCCTCTAAAAAGAAGAATATCTTGCTTATTGGTGATGGTATCAACAAGACTTGTATCACAGGAAACCACAGTGTTGTAGATGGTTGGACCACTTTCAATTCTTCAACCTTTGCTGTTTCTGGAGAAAGATTCGTTGCTGTGGATGTTACATTCAGAAACACTGCTGGCCCTGAGAAGCACCAAGCAGTGGCTGTGAGGAACAATGCAGACCTGTCCACATTCTACCATTGCAGCTTTGAAGGATATCAAGACACTCTCTATGTCCACTCTCTGAGACAATTCTACAGAGAATGTGACATTTATGGCACTGTGGATTTCATTTTTGGAAATGCTGCTGTGGTGTTCCAGAGCTGCAACATCTATGCCAGAAAACCATTGCCAAAGCAGAAGAATGCTGTCACAGCACAAGGGAGAACAGACCCCAATCAAAACACTGGAATTTCAATCCAGAATTGCAAGATTGAGGCTGCACCTGACTTGGCTGCAGACTTGAACTCAACTGAAAACTACTTGGGCAGGCCATGGAAACTGTACTCAAGAACAGTATACATGCAGTCATATATTGGAGAACTGATTCAATCCGTTGGATGGCTAGAATGGAATGGAACAAATGGATTAGACACCCTCTTTTATGGTGAGTTCAATAACTCTGGACCAGGTTCTGATACAAGCAAAAGGGTACAATGGAATGGTTACAATATACTGAGCCCTACACAAGCTTGGAACTTTACTGTGTATAACTTTACCTTGGGTAATACATGGCTTCCGGATACCGATATACCCTACTCTGAAGGGCTCTAG 1902 0.4506 MFSPPISLLFLFFLFLPLLLAQTASPSPSPTHATHSPSPSPSKHAPSPSPSSTHAPSPSPSKHAPSPSPSPTHAPSPSPSPSPSPTTAPPPPPPLPPTSPSAACKATLYPKLCRSLLSSIRASPSDPYNLGKFSIKQSLKQAKKLAKVFSNFLKKHQSSSLSSAEIAALEDCSELSQLSVGYLESVSEELKSADPSNTELVEKIETYLSAVATNHYTCYDGLVLIKSNIVNTLAVPLNNVTQLYSVSLGLVTQALKKNQKKHKTRKHGLPTQNNKVRQPLKKLIKLLHTKHSCEAPSNCSTRSERILKESESKGILLKEFVIVNLNGTDNFTSIGEAIAAAPDNLRPEDGYFLIYAKEGSYEEYVTVPSKKKNILLIGDGINKTCITGNHSVVDGWTTFNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVAVRNNADLSTFYHCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPLPKQKNAVTAQGRTDPNQNTGISIQNCKIEAAPDLAADLNSTENYLGRPWKLYSRTVYMQSYIGELIQSVGWLEWNGTNGLDTLFYGEFNNSGPGSDTSKRVQWNGYNILSPTQAWNFTVYNFTLGNTWLPDTDIPYSEGL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00378 633 Pfam Plant invertase/pectin methylesterase inhibitor 101 249 IPR006501 GO:0004857
Viun11g00378 633 SUPERFAMILY Pectin lyase-like 318 632 IPR011050 -
Viun11g00378 633 MobiDBLite consensus disorder prediction 24 101 - -
Viun11g00378 633 NCBIfam pectinesterase inhibitor domain 102 253 IPR006501 GO:0004857
Viun11g00378 633 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 102 253 IPR035513 -
Viun11g00378 633 FunFam Pectinesterase 315 633 - -
Viun11g00378 633 PANTHER PECTINESTERASE 101 623 - -
Viun11g00378 633 Gene3D Invertase/pectin methylesterase inhibitor family protein 101 254 IPR035513 -
Viun11g00378 633 ProSitePatterns Pectinesterase signature 2. 467 476 IPR033131 -
Viun11g00378 633 Pfam Pectinesterase 321 618 IPR000070 GO:0030599|GO:0042545
Viun11g00378 633 CDD PMEI-like_3 103 252 - -
Viun11g00378 633 MobiDBLite consensus disorder prediction 24 40 - -
Viun11g00378 633 MobiDBLite consensus disorder prediction 41 100 - -
Viun11g00378 633 Gene3D - 316 633 IPR012334 -
Viun11g00378 633 PRINTS Proline rich extensin signature 20 32 - -
Viun11g00378 633 PRINTS Proline rich extensin signature 58 70 - -
Viun11g00378 633 PRINTS Proline rich extensin signature 34 50 - -
Viun11g00378 633 PRINTS Proline rich extensin signature 72 93 - -
Viun11g00378 633 SMART PMEI_2 95 250 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00378 Viun-Chr11 3303484 3306795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00378 103 633 Carbohydrate Esterase AT3G10720 62.127 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00378 K01051 - gmx:100808277 945.651