Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00377 ATGTCTTCCTTCAAATCTTATGGCAAAGTTGATGAATCAGAGCAAGCCATGCTCGAAGTTCGGCGAAAAAGCCGAAAGAGAATCACCATCATAGCGTTGTCCACAATAGTCCTGATTGGAGTTGTGTTTGCTGCAGTGTTTGGAACAGTTGCTCATAACAACAACAACAACTCGAATGATGGTGAAAGCAATGTTGCTTCTGTTTCCAGCTCAGTGAAGGCTGTTTGTGATGTGACACTCTACAAGGATGCCTGCTACAGCAGCCTTGGTTCTGTTGCACAGTCGGGTGATGTTCGACCTGAGAATTTGTTCTTGTTGTCTATTAAGGTGGCCTTAGGTGAGGTTTCTAAGGCTGCTCAGTATTTCTCTGAGAAGGGAGGGTTCAGTGGCTTGAATGTTGATGAAAGGATTAAGAACTGCAAGGATCTTCTGGGTCTTGCAGTTGATCATCTGAATAGCTCTCTGGTTTCTGGGGGGAAGTTTTCTTTGGTTGATGTGTTGGAGGATCTCAGAACTTGGTTGAGTGCTGCAGGTACCTACCAGCAAACTTGCATTGATGGATTTGTAGAGGCAGAAAAAGCATTGAAGAGCAGTGTATTCAACAATCTGAAAAATTCAACAGAGTTCACCAGTAACAGTCTTGCCATCGTTACATGGCTTGACAAGGCTGCAAGCACTGTGAATTTGAGGCGCTTGTTGAGTGCTTTGCCACACCAAGATGAAGAACCAAAGTGGCTTCATTCTAAAGATCGAAAGATGCTTCAAGCTGATGATTTGAAGAAGAAAGCTAATATTGTTGTTGCAAAAGATGGCAGCGGAAATTTTAAAACAATCACTTCTGCACTTACACATGTCCCTGAAAAGAGTGACAAGAGGACTGTGATCTATGTGAAGAAGGGGATTTATAATGAAAATGTGAGGGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAACGCCACCATTGTATCCGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCATCAGCAACATTTGCTGTGTTTGGGAAGAATTTCATTGCTAGGGACATGGGATTTCGCAACACAGCTGGTCCAGAGAAGCACCAGGCAGTGGCACTGATGAACACTGCAGATCAAGCAGTTTACTACAGGTGTCAAATTGATGCATTTCAGGACAGTCTCTACGCTCATTCCAACCGCCAATTCTACAGAGAATGCAACATTTATGGCACAGTTGATTTCATTTTTGGTAATTCAGCAGTTGTGCTGCAAAACTGCAACATTTTTCCAAGGGTGCCTATGCAGGGTCAGCAGAACACCATAACAGCACAGGGCAAAACTGATCCCAACATGAACACAGGAATTTCAATTCAAAATTGCAGCATTTCACCCTTTGGGGACCTAAGTTCTGTGCAGACTTACCTTGGAAGACCCTGGAAGAACTATTCAACCACAGTGTTTATGCAATCCACATTGGGGAGTTTCATCAATCCAAATGGATGGTTACCATGGGTAGGAAACTCAGCACCAGATACCATATTTTATGCAGAATTTCAGAATGTTGGACCTGGAGCTTCAACAAAAAATAGGGTGAAGTGGAAGGGTTTGAAAACCATTACACTTAAACAAGCTACAAAGTTTACTGTCAAGACTTTTATTTCAGGGGACAAATGGATTCCAGCTTCGGGTGCCACCTTTAAATCTTCTCTGTGA 1713 0.4297 MSSFKSYGKVDESEQAMLEVRRKSRKRITIIALSTIVLIGVVFAAVFGTVAHNNNNNSNDGESNVASVSSSVKAVCDVTLYKDACYSSLGSVAQSGDVRPENLFLLSIKVALGEVSKAAQYFSEKGGFSGLNVDERIKNCKDLLGLAVDHLNSSLVSGGKFSLVDVLEDLRTWLSAAGTYQQTCIDGFVEAEKALKSSVFNNLKNSTEFTSNSLAIVTWLDKAASTVNLRRLLSALPHQDEEPKWLHSKDRKMLQADDLKKKANIVVAKDGSGNFKTITSALTHVPEKSDKRTVIYVKKGIYNENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGPEKHQAVALMNTADQAVYYRCQIDAFQDSLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNIFPRVPMQGQQNTITAQGKTDPNMNTGISIQNCSISPFGDLSSVQTYLGRPWKNYSTTVFMQSTLGSFINPNGWLPWVGNSAPDTIFYAEFQNVGPGASTKNRVKWKGLKTITLKQATKFTVKTFISGDKWIPASGATFKSSL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00377 570 FunFam Pectinesterase 258 570 - -
Viun11g00377 570 Pfam Plant invertase/pectin methylesterase inhibitor 71 216 IPR006501 GO:0004857
Viun11g00377 570 ProSitePatterns Pectinesterase signature 1. 289 308 IPR018040 -
Viun11g00377 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 220 IPR035513 -
Viun11g00377 570 CDD PMEI-like_3 76 222 - -
Viun11g00377 570 FunFam Pectinesterase 68 221 - -
Viun11g00377 570 SMART PMEI_2 67 216 IPR006501 GO:0004857
Viun11g00377 570 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Viun11g00377 570 Gene3D - 259 570 IPR012334 -
Viun11g00377 570 NCBIfam pectinesterase inhibitor domain 65 220 IPR006501 GO:0004857
Viun11g00377 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 222 IPR035513 -
Viun11g00377 570 PANTHER PECTINESTERASE 39 560 - -
Viun11g00377 570 SUPERFAMILY Pectin lyase-like 262 566 IPR011050 -
Viun11g00377 570 Pfam Pectinesterase 264 556 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00377 Viun-Chr11 3299911 3303402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00377 7 570 Carbohydrate Esterase AT3G10710 58.127 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00377 - - gmx:100816529 953.355