Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00352 ATGTCTGCTTTGCAAAAACAAACCCAGTCATTACAAGAACTGAACCCGGAGAAGGAAAGCTGGAATATTGTTGCAAGAGTTGTAAGGTTATGGTTTGTAGAAGATTACACAAAAGGAAAATCTCCATTTTCCATGGAGATTGTTCTTCAAGACAAAGAGGGTGTCCTAATCCATGCGTCTGTTAGACGCACACTGATATACAAATTCCAATCTGAAATCAAAGAGGATAAGGTTTACTCCATTCAGTCTTTTAGTGTTTCATGTAATGGTGGTTCTTATAGAACTACAAATCATGCCTATAAGATCAACTTCCAATTTGGAACCAAGGTCAATTTGGTAGAATCTACCTTAGTTCCCAATATTAGTACTGCATACACCCCTATTTCAACCATCCAAGCACCTGGTTTTGACTCAGATTACTTAGTTAATGTCATTGGAATGTTGACTGGTGTTGGAACAGAGAGAGAGTTAGAGAAAGGTGGTAAGAAGACCAAGATGAATGTCATCCTTATTGAATATGATGGGATGTGGGATAGTACTGAATCTCCTTCTCAACCTCTTACCCAACTTGGTCAGTCTTCAAAAGTTAGCTTAGAAGAAGATTTCATTAAGCTGCATCCTAGATGCTCAATTGAAGGTCTCAAAGATTTTGAACAGGAAAGTACTTTTGTAGTGAAGGCTACTATCAAACATGTTCTAGATCATGATGATTGGTGGTACACAACATGTATCTGCAACAAAGCTGTTTATCCTGACTCCAAAATGTTTTTTTGTGAGAAATGTAACAAACATGTCATTAAGGTTACACCTAGGTTTAAACTTAGACTTTGTGTAATTGATGCTACTGATTCTACAACTTTTGTTGTATTTGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTCTGATATTCTTGACTTACAAGACAAGAACACTGCTGCTGGTAACTTGCCTAAAGAGTTTGAAGTCCTCATTGATAAGACCTATCTGTTCAAAGTTGAGTGCAAGAATGATTATAATAGCAAATTTGACCAATCATTTAGAGTTAAAAAAGTCTGCATGGATGAAAAAATCATTGAAAGCTTTACTGATGTTGAACTTAAGTCTTTGGATGTATACTCTGCAAATGAAGAAGAAAGTAAATTTAAGCAGATTACAAATGAGATTGCACCTGATACCATTGCAGAGGATTTGCTGCTCAAATTCACTGAAGAATCAACTGATGTTGAGCCTGTAAGTGATCATTTGAACACTATAGAATCAAGCCCTGTTTCTACAGAGGAAGCTTTGGTCAATCAACCTTTAATTGATGTTGAAAATGATGACTTAACCCATAAAGAATCATCTCATCTGGATAATCTTAGCTTTGATTTGGCTACCAAAGCACGTGTCCCGGCAATTAAAAGGCAGAATCGATCTACGGCTCAAGAGAACAAGAAGATCCCAGTCAAGATGTTGAAGAAGAACATCAAGATTGAAAAGTGA 1488 0.3663 MSALQKQTQSLQELNPEKESWNIVARVVRLWFVEDYTKGKSPFSMEIVLQDKEGVLIHASVRRTLIYKFQSEIKEDKVYSIQSFSVSCNGGSYRTTNHAYKINFQFGTKVNLVESTLVPNISTAYTPISTIQAPGFDSDYLVNVIGMLTGVGTERELEKGGKKTKMNVILIEYDGMWDSTESPSQPLTQLGQSSKVSLEEDFIKLHPRCSIEGLKDFEQESTFVVKATIKHVLDHDDWWYTTCICNKAVYPDSKMFFCEKCNKHVIKVTPRFKLRLCVIDATDSTTFVVFDRDASAMLKKSCSDILDLQDKNTAAGNLPKEFEVLIDKTYLFKVECKNDYNSKFDQSFRVKKVCMDEKIIESFTDVELKSLDVYSANEEESKFKQITNEIAPDTIAEDLLLKFTEESTDVEPVSDHLNTIESSPVSTEEALVNQPLIDVENDDLTHKESSHLDNLSFDLATKARVPAIKRQNRSTAQENKKIPVKMLKKNIKIEK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00352 495 CDD RPA1_DBD_A_like 23 110 - -
Viun11g00352 495 SUPERFAMILY Nucleic acid-binding proteins 10 114 IPR012340 -
Viun11g00352 495 Gene3D - 6 112 IPR012340 -
Viun11g00352 495 Pfam Replication factor-A C terminal domain 223 353 IPR013955 -
Viun11g00352 495 SUPERFAMILY Nucleic acid-binding proteins 209 353 IPR012340 -
Viun11g00352 495 Pfam Domain of unknown function DUF223 46 131 IPR003871 -
Viun11g00352 495 PANTHER OS03G0429900 PROTEIN 214 353 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun11g00352 495 CDD RPA1_DBD_C 223 353 IPR047192 -
Viun11g00352 495 Gene3D - 192 362 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00352 Viun-Chr11 3101293 3103824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00352 223 353 Core DNA Replication Machinery Family AT5G08020 25.185 4.04e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00352 - - vun:114169438 988.023