Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00335 ATGGGACGAGTGAGTAATGAAATTGAGGATGAGGTGCTTCCCAGTGATACGAGTGCAGCACAGTTGAATGATGAGAGTTACGAAGGAAGTACCAGCGTTGTTCTGAAGAAAGGGCCGTGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAACAAACATGGGGAGGGGAATTGGAATGCTGTTCAGAAGCACACAGGGTTATTACGTTGTGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCTAATTTAAAGAAAGGGGCGTTTACTGCAGAAGAGGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCCGGTCGCACTGATAATGAGATAAAGAATTATTGGAATACCCGTATCAAGAGGCGTCAACGGGCTGGGTTGCCACTTTACCCTCCAGAGATGTGTTTGCAAGATTTTCAAGAGAATCAGCGTAACCAAAGCAATGGTGGACTTAATGGTGGCAATAAAATGCATCTTGATTTGTTGCAGAAAAATAGTTATGAGATACATGGTGCTATATTTGATAGTACGAAGGATAATCAGGGAATCTTACCTTATGCACCCAAGTTTTCCGATGTTTCTGTTTGTGGCAACATGCTGAAAGGTCTTGATTCTTCTTCTCAATATTGTAGTGTTATGCCACCAGCATCACCTAAGAACAAGCGTCTTAGAGAGTCAACAATACCGACGTTTAATGGTTCCAATGATACGAAAAAAAATGGTCTATATCCATTGTGTAAAAATCGGGACAATAATTATGATAAGATTTCACAATCATTTGGAATGCAAGCACTCCTTGATCCTGGTCCCTCCTTACACAACTCGATGTGTTACAGCCATTCACCTTCAAATGGCAATCCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTCATTTAGGTAGATGGGGTACATCTCCCCCACCTCCGTTGCTCGAGTCAGTTGATGATTTCTTTCAGTCTCATACACCAATTAGTACACTCGAGTCAGATTGTTCTTCCCCACAAAATAGTGGCCTGCTGGATGCCTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAGGAACCATTGTTCTGACAAAAGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGGCGACAACTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGATTACGCTGACCCTGTATCTCCCTTTGGTGCAACTTCAATATTGAATGAGTGCCCTGATCTTAGAGGCAGTGAGAATTCATTGGACGAACAGCTATCCCTCCAGACATTTACTGGCAACATTCCAAAATTAGAGTTTGTTGATAAGGTTTGGACTCCTGACAATGAAAATCAAACCTTGTCCTTCTTGAATATCACTCGTCCAGACTTGTTGTTTGCTTCAGATTGGAATGACCTAGGTTTTGGGCATGGCAAGAACCAAGCCATCACAACTGATACAGCAACGACCCTTCTTGGAGAGGATTTTGCTGCTGACCATAAGCATATGACTTCTGGAACTTCTCAGTCAAGTCAGGTGTGGGGTTTTGGTTCTTGTGCAACGGCAGCTAATAATATGCATGCTCTCTGTCACCTATCCGATCTTGGTTAA 1671 0.4321 MGRVSNEIEDEVLPSDTSAAQLNDESYEGSTSVVLKKGPWTSTEDDILVDYVNKHGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERFIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEMCLQDFQENQRNQSNGGLNGGNKMHLDLLQKNSYEIHGAIFDSTKDNQGILPYAPKFSDVSVCGNMLKGLDSSSQYCSVMPPASPKNKRLRESTIPTFNGSNDTKKNGLYPLCKNRDNNYDKISQSFGMQALLDPGPSLHNSMCYSHSPSNGNPSTSKPTFEAVKLELPSLQYPELHLGRWGTSPPPPLLESVDDFFQSHTPISTLESDCSSPQNSGLLDALLYQAKTLSSSRNHCSDKSSNSSTATPGDRGDNSALNVYETEWEDYADPVSPFGATSILNECPDLRGSENSLDEQLSLQTFTGNIPKLEFVDKVWTPDNENQTLSFLNITRPDLLFASDWNDLGFGHGKNQAITTDTATTLLGEDFAADHKHMTSGTSQSSQVWGFGSCATAANNMHALCHLSDLG 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00335 556 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Viun11g00335 556 MobiDBLite consensus disorder prediction 381 401 - -
Viun11g00335 556 FunFam Transcription factor GAMYB 92 138 - -
Viun11g00335 556 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Viun11g00335 556 CDD SANT 39 84 IPR001005 -
Viun11g00335 556 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Viun11g00335 556 CDD SANT 92 133 IPR001005 -
Viun11g00335 556 Gene3D - 92 138 - -
Viun11g00335 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Viun11g00335 556 SMART sant 89 137 IPR001005 -
Viun11g00335 556 SMART sant 36 86 IPR001005 -
Viun11g00335 556 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Viun11g00335 556 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Viun11g00335 556 Gene3D - 36 89 - -
Viun11g00335 556 MobiDBLite consensus disorder prediction 230 250 - -
Viun11g00335 556 FunFam MYB-related transcription factor 36 89 - -
Viun11g00335 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Viun11g00335 556 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 22 502 - -
Viun11g00335 556 MobiDBLite consensus disorder prediction 381 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00335 Viun-Chr11 2848733 2854917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00335 34 555 MYB Transcription Factor Family AT5G06100 41.917 2.85e-117 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g00335 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00335 K09422 - gmx:100810415 847.425