LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00325	ATGGGCATGGGAAAACCAAAAACAGAACTCAATGTGAGATCACTATATTTCTTTGTTTTCATGTTCTTGCTAAGCTTCAAATCTCTAGTTACCAAAGCACAACCACCCTTTTATTTGGGAGATGACTGTGATTTCACTCCTCAAAAGCCTCTCAGCAATGCATACAAAACCAACATTAACAACATGCTCTCATGGCTATCTTCAGATGCAGCCACAAGCAAAGGCTATAACTACAAAACCATAGGCAACAGCACCCCTCTGTATGGCCTCTATGATTGTCGTGGTGATGTTGTCGGCTACTTCTGCCAATTCTGTGTCTCCGCTGCTTCCAGAAGAGTCCTTCAGCACTGCCCTAACAGGGTCTCTGCTGTCATGTACTACAACTTCTGCATTCTGAGGTACTCCAATCAGAACTTCATTGGGAATGTCACGATAAACCATCCGAGACATCATGTTGGGAACAAAAGTGTGTCTGATGCAGAAGAGATTCAAAAGGGTGAGGATTTCATGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACATGTTGTACTACATGGATGGCTTCAATTTGAGCTCCACTCAGAGAAGGTATGGTCTGGTGCAGTGCACCAGAGACCTCACCAGTGAGAGATGCAGACAGTGCTTGGAGGCCATGCTGGCACAGGTTCCAAAATGTTGTGAACAGAAGCTGGGGTGGCTCGTGGGAACTGCTAGTTGTCACATAAAGTACGATGATTATATGTTCTACCTTTTCGACAACCAATCATATATTGTGCCTGGTTTAACAGCTAAACAAGGGGATGGTAGTAAGTCAAGAAACTTGATCATTGGATTGAGTGTGGTGGGGTTAGTAGCTCTGTGTTTGAGTATATATTGCTTATGCTACTGGAATAGAGTAAGAAAAGATGGGCTGATAACTGATACTATTCCTCTGTCTGCGTATACAAATTTGCCTATAATCCCATTAATCACAATTCTTGAGAGTACTGATAACTTCTCAGAAACGTCTAAATTAGGTGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCAGATGGAAGACAAGTTGCAGTCAAAAGGCTATCAAAAGCTTCTAGTCAAGGCTCAGAGGAGTTTAAGAATGAAGTAACATTCATAGCTAAATTGCAGCATTGCAACCTTGTAAGACTTGTGGCATGCTGCTTGGACGAAAATGAAAAGATACTGGTTTATGAGTATTTGTCAAATGCAAGTCTTGACTTTCACCTATTTGATGATGAAAAAAGGAAGCAACTTGATTGGAAACTAAGGTCAAGCATAATCAATGGAATAGCAAGAGGTCTTTTATACCTTCATGAGGATTCTAGACTCAAGGTAATTCACAGAGATCTCAAAGCTAGTAATGTTCTGTTAGATGATGAAATGAATCCGAAGATATCAGATTTTGGATTAGCAAGAGCATTTGAAAATGGTCAGAACCAGGCAAATACAAACCGAGTAATGGGCACTTATGGATACATGGCTCCGGAATATGCTATGGAAGGATTGTTTTCAATGAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTCTAGAAATCATTTGTGGGAAAAAGAACAGTGGATTTTTTCTATCAGAACATGGTCAGAGTCTTCTTTTATATAGTTGGAGAATGTGGTGTGCAGGAAAATGCTTGGAATTGATGGATCCAGTGTTAGAAAATTCCTACATATCCAATGAAGTTGAGAAGTTTATACAGATTGGTTTATTGTGTGTTCAAGAAGCAGCAACAACTAGACCAACCATGTCCACTATCATGGTATTGTTGGCAAGTGATGTGATGAACATTCCAAAACCCAACAAACCTGCATTCTCAGTTGGAAGAATGACCTCAGTGGAAACTTCTGCTACTGAGAGTTCCAAAAATATTTCCATTAATGATGCATCTATCTCTAGCATTGCACCAAGGTAA	1959	0.4028	MGMGKPKTELNVRSLYFFVFMFLLSFKSLVTKAQPPFYLGDDCDFTPQKPLSNAYKTNINNMLSWLSSDAATSKGYNYKTIGNSTPLYGLYDCRGDVVGYFCQFCVSAASRRVLQHCPNRVSAVMYYNFCILRYSNQNFIGNVTINHPRHHVGNKSVSDAEEIQKGEDFMRSLIRKATVETNMLYYMDGFNLSSTQRRYGLVQCTRDLTSERCRQCLEAMLAQVPKCCEQKLGWLVGTASCHIKYDDYMFYLFDNQSYIVPGLTAKQGDGSKSRNLIIGLSVVGLVALCLSIYCLCYWNRVRKDGLITDTIPLSAYTNLPIIPLITILESTDNFSETSKLGEGGFGPVYKGILPDGRQVAVKRLSKASSQGSEEFKNEVTFIAKLQHCNLVRLVACCLDENEKILVYEYLSNASLDFHLFDDEKRKQLDWKLRSSIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFENGQNQANTNRVMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIICGKKNSGFFLSEHGQSLLLYSWRMWCAGKCLELMDPVLENSYISNEVEKFIQIGLLCVQEAATTRPTMSTIMVLLASDVMNIPKPNKPAFSVGRMTSVETSATESSKNISINDASISSIAPR	652

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00325	652	Gene3D	Phosphorylase Kinase; domain 1	308	409	-	-
	Viun11g00325	652	SMART	serkin_6	334	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00325	652	Pfam	Protein tyrosine and serine/threonine kinase	337	603	IPR001245	GO:0004672\|GO:0006468
	Viun11g00325	652	FunFam	Cysteine-rich receptor-like protein kinase 10	149	250	-	-
	Viun11g00325	652	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	455	467	IPR008271	GO:0004672\|GO:0006468
	Viun11g00325	652	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	52	648	-	-
	Viun11g00325	652	FunFam	Cysteine-rich receptor-like protein kinase 10	307	409	-	-
	Viun11g00325	652	ProSiteProfiles	Protein kinase domain profile.	334	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00325	652	Gene3D	Transferase(Phosphotransferase) domain 1	410	614	-	-
	Viun11g00325	652	CDD	STKc_IRAK	340	601	-	-
	Viun11g00325	652	FunFam	Cysteine-rich receptor-like protein kinase 28	39	138	-	-
	Viun11g00325	652	Gene3D	-	43	139	IPR038408	-
	Viun11g00325	652	Gene3D	-	149	250	IPR038408	-
	Viun11g00325	652	ProSiteProfiles	Gnk2-homologous domain profile.	36	139	IPR002902	-
	Viun11g00325	652	Pfam	Salt stress response/antifungal	51	137	IPR002902	-
	Viun11g00325	652	Pfam	Salt stress response/antifungal	168	248	IPR002902	-
	Viun11g00325	652	ProSiteProfiles	Gnk2-homologous domain profile.	145	250	IPR002902	-
	Viun11g00325	652	FunFam	Liguleless narrow1	410	613	-	-
	Viun11g00325	652	SUPERFAMILY	Protein kinase-like (PK-like)	318	633	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00325	Viun-Chr11	2713598	2716901	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00325	17	652	Receptor kinase-like Gene Family	AT4G05200	40.896	5.26e-166	489

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00325		PK_Tyr_Ser-Thr	1.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00325	-		-	vum:124821055	1231.47