Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00325 ATGGGCATGGGAAAACCAAAAACAGAACTCAATGTGAGATCACTATATTTCTTTGTTTTCATGTTCTTGCTAAGCTTCAAATCTCTAGTTACCAAAGCACAACCACCCTTTTATTTGGGAGATGACTGTGATTTCACTCCTCAAAAGCCTCTCAGCAATGCATACAAAACCAACATTAACAACATGCTCTCATGGCTATCTTCAGATGCAGCCACAAGCAAAGGCTATAACTACAAAACCATAGGCAACAGCACCCCTCTGTATGGCCTCTATGATTGTCGTGGTGATGTTGTCGGCTACTTCTGCCAATTCTGTGTCTCCGCTGCTTCCAGAAGAGTCCTTCAGCACTGCCCTAACAGGGTCTCTGCTGTCATGTACTACAACTTCTGCATTCTGAGGTACTCCAATCAGAACTTCATTGGGAATGTCACGATAAACCATCCGAGACATCATGTTGGGAACAAAAGTGTGTCTGATGCAGAAGAGATTCAAAAGGGTGAGGATTTCATGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACATGTTGTACTACATGGATGGCTTCAATTTGAGCTCCACTCAGAGAAGGTATGGTCTGGTGCAGTGCACCAGAGACCTCACCAGTGAGAGATGCAGACAGTGCTTGGAGGCCATGCTGGCACAGGTTCCAAAATGTTGTGAACAGAAGCTGGGGTGGCTCGTGGGAACTGCTAGTTGTCACATAAAGTACGATGATTATATGTTCTACCTTTTCGACAACCAATCATATATTGTGCCTGGTTTAACAGCTAAACAAGGGGATGGTAGTAAGTCAAGAAACTTGATCATTGGATTGAGTGTGGTGGGGTTAGTAGCTCTGTGTTTGAGTATATATTGCTTATGCTACTGGAATAGAGTAAGAAAAGATGGGCTGATAACTGATACTATTCCTCTGTCTGCGTATACAAATTTGCCTATAATCCCATTAATCACAATTCTTGAGAGTACTGATAACTTCTCAGAAACGTCTAAATTAGGTGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCAGATGGAAGACAAGTTGCAGTCAAAAGGCTATCAAAAGCTTCTAGTCAAGGCTCAGAGGAGTTTAAGAATGAAGTAACATTCATAGCTAAATTGCAGCATTGCAACCTTGTAAGACTTGTGGCATGCTGCTTGGACGAAAATGAAAAGATACTGGTTTATGAGTATTTGTCAAATGCAAGTCTTGACTTTCACCTATTTGATGATGAAAAAAGGAAGCAACTTGATTGGAAACTAAGGTCAAGCATAATCAATGGAATAGCAAGAGGTCTTTTATACCTTCATGAGGATTCTAGACTCAAGGTAATTCACAGAGATCTCAAAGCTAGTAATGTTCTGTTAGATGATGAAATGAATCCGAAGATATCAGATTTTGGATTAGCAAGAGCATTTGAAAATGGTCAGAACCAGGCAAATACAAACCGAGTAATGGGCACTTATGGATACATGGCTCCGGAATATGCTATGGAAGGATTGTTTTCAATGAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTCTAGAAATCATTTGTGGGAAAAAGAACAGTGGATTTTTTCTATCAGAACATGGTCAGAGTCTTCTTTTATATAGTTGGAGAATGTGGTGTGCAGGAAAATGCTTGGAATTGATGGATCCAGTGTTAGAAAATTCCTACATATCCAATGAAGTTGAGAAGTTTATACAGATTGGTTTATTGTGTGTTCAAGAAGCAGCAACAACTAGACCAACCATGTCCACTATCATGGTATTGTTGGCAAGTGATGTGATGAACATTCCAAAACCCAACAAACCTGCATTCTCAGTTGGAAGAATGACCTCAGTGGAAACTTCTGCTACTGAGAGTTCCAAAAATATTTCCATTAATGATGCATCTATCTCTAGCATTGCACCAAGGTAA 1959 0.4028 MGMGKPKTELNVRSLYFFVFMFLLSFKSLVTKAQPPFYLGDDCDFTPQKPLSNAYKTNINNMLSWLSSDAATSKGYNYKTIGNSTPLYGLYDCRGDVVGYFCQFCVSAASRRVLQHCPNRVSAVMYYNFCILRYSNQNFIGNVTINHPRHHVGNKSVSDAEEIQKGEDFMRSLIRKATVETNMLYYMDGFNLSSTQRRYGLVQCTRDLTSERCRQCLEAMLAQVPKCCEQKLGWLVGTASCHIKYDDYMFYLFDNQSYIVPGLTAKQGDGSKSRNLIIGLSVVGLVALCLSIYCLCYWNRVRKDGLITDTIPLSAYTNLPIIPLITILESTDNFSETSKLGEGGFGPVYKGILPDGRQVAVKRLSKASSQGSEEFKNEVTFIAKLQHCNLVRLVACCLDENEKILVYEYLSNASLDFHLFDDEKRKQLDWKLRSSIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFENGQNQANTNRVMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIICGKKNSGFFLSEHGQSLLLYSWRMWCAGKCLELMDPVLENSYISNEVEKFIQIGLLCVQEAATTRPTMSTIMVLLASDVMNIPKPNKPAFSVGRMTSVETSATESSKNISINDASISSIAPR 652
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00325 652 Gene3D Phosphorylase Kinase; domain 1 308 409 - -
Viun11g00325 652 SMART serkin_6 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00325 652 Pfam Protein tyrosine and serine/threonine kinase 337 603 IPR001245 GO:0004672|GO:0006468
Viun11g00325 652 FunFam Cysteine-rich receptor-like protein kinase 10 149 250 - -
Viun11g00325 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Viun11g00325 652 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 648 - -
Viun11g00325 652 FunFam Cysteine-rich receptor-like protein kinase 10 307 409 - -
Viun11g00325 652 ProSiteProfiles Protein kinase domain profile. 334 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00325 652 Gene3D Transferase(Phosphotransferase) domain 1 410 614 - -
Viun11g00325 652 CDD STKc_IRAK 340 601 - -
Viun11g00325 652 FunFam Cysteine-rich receptor-like protein kinase 28 39 138 - -
Viun11g00325 652 Gene3D - 43 139 IPR038408 -
Viun11g00325 652 Gene3D - 149 250 IPR038408 -
Viun11g00325 652 ProSiteProfiles Gnk2-homologous domain profile. 36 139 IPR002902 -
Viun11g00325 652 Pfam Salt stress response/antifungal 51 137 IPR002902 -
Viun11g00325 652 Pfam Salt stress response/antifungal 168 248 IPR002902 -
Viun11g00325 652 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Viun11g00325 652 FunFam Liguleless narrow1 410 613 - -
Viun11g00325 652 SUPERFAMILY Protein kinase-like (PK-like) 318 633 IPR011009 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun11g00325 Viun-Chr11 2713598 2716901 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00325 17 652 Receptor kinase-like Gene Family AT4G05200 40.896 5.26e-166 489
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00325 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00325 - - vum:124821055 1231.47