Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00322 ATGTTGGGAACACAACTAAGCGTGAGATCAATATGCTTTGGTTTCTTGTTATCTTTGAGTTTCAGTTCGCTCATTTACCAGGGAAGTTACTGTGAAAACACCACCCAACAACCTCTCACCACTGCATACAAAACCAATGTTGAGAGAATCCTCTCATTGATGATCTCAGATGCAGCCACAAGCAAAGGGTATAACTACACCACCATAGGAAACAACAACACTGTGTATGGCCTCTACGATTGCCGTCGTGACGTGGTTGGATACTTTTGTCAATTCTGTGTCTCTAATGCTGCCCTAGAAATTCCTCAGCACTGCCCCAATAGAGTGTCTGCTATGGTGTGGTATGATTTCTGCATTCTGAGGTACTCAAATGAAAACTTCTTTGGAAAAGTTCTTACACACCCGACATGGCATGCTGTTGGAAACAAAAACATTTCAAACAAGGAAGAGACTAAGAAAGCTGAGGATTTTATGAGAAGCTTAATCAGAAAAGCAACAATGGAAACCAGCATGTTGTACTACGTGGATGGCTTCAACTTGAGTTTCACTCAATCAAGGTATGGCTTGGTGCAATGCACTAAAGATCTCACAAATGATGGATGCAGAGAGTGTTTGGAGGCAATGTTAGCAGAGGTTCCCAAATTTTGCACACAAAAGTTAGGATGGTTCATTTGGTCTGGAACTTGTATGATAAAGTATGATGACTATATGTTCTACATTCCTAACGACCAAACTTCTTCAATTCCTGTGTCAAATCCGGAAACAGATAAACATGGAGGTAACAAGAGGTCAAAAATCTTGATCATCAGCTTCTATGTGATGGGGTCAACAACCCTACTATGTTTGGGTGTATATTTATTCTTGTACAGAAGAAGAGATGGAATTCGGCGATCATCATTTCATAAAATTCAAACCGAGGAAATGTTGAATACTGACCTGCCTATAATCCCATTAATCACAATTCTACGTAGCACTGATACCTTTTCAGAAGCAGCTAAATTGGGGGAAGGTGGATTTGGCTCTGTTTACAAGGGAATTCTACCAGATGGAAGACAAATAGCAGTGAAAAGGCTGTCAGAATTTTCTGGTCAAGGTTCAGAGGAGTTCAACAATGAAGTAATGTTCATAGCTAAATTGCAACATCGCAACCTTGTAAGACTCTATGGATGCTGCTTGGAGGAAAAAGAAAAGATACTTGTATACGAGTATATGCCAAACTCAAGTCTCTACTTTCACCTGTTTGATGATGAGAAAAGAAAACAACTTGACTGGAAAGTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTCTTCTATACCTTCATGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAACTAGCAATGTTCTATTAGACCATGACATGAATCCCAAAATATCAGACTTTGGATTGGCAAAGGCATTTGAAATTGGACAGAACCAAGCAAATACAAAGCGAATAATGGGCACTTATGGATACATGGCTCCTGAGTACGCTATGCAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTAGTTCTAGAAACCATTTGTGGAAGAAAAAACAATGGATTCTATCTGTCGGAACATGATGAGACTCTTCTTTTATACGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAATTGATGGACCCAATGCTGGAAAAATCCTTCAAAGCCAGTGAAGTTGAGAAGTGCATACACATTGCGTTGTTGTGTGTTCAAGAAAATGCAACATACAGACCAACCATGTCAGATGTTGTTGTAATGCTAGGGATTGACAAATTAAACCTTCCAAAACCCAAGCACCCAGCATTTTCTGTTGGAAGAAAGTTCTTAGGGGATGAACCAAAATCAAAAAGATCCAAGAATCTTCTTAATACTAATGTAACAATCTCTATTACTTTACCAAGGTAA 1941 0.3905 MLGTQLSVRSICFGFLLSLSFSSLIYQGSYCENTTQQPLTTAYKTNVERILSLMISDAATSKGYNYTTIGNNNTVYGLYDCRRDVVGYFCQFCVSNAALEIPQHCPNRVSAMVWYDFCILRYSNENFFGKVLTHPTWHAVGNKNISNKEETKKAEDFMRSLIRKATMETSMLYYVDGFNLSFTQSRYGLVQCTKDLTNDGCRECLEAMLAEVPKFCTQKLGWFIWSGTCMIKYDDYMFYIPNDQTSSIPVSNPETDKHGGNKRSKILIISFYVMGSTTLLCLGVYLFLYRRRDGIRRSSFHKIQTEEMLNTDLPIIPLITILRSTDTFSEAAKLGEGGFGSVYKGILPDGRQIAVKRLSEFSGQGSEEFNNEVMFIAKLQHRNLVRLYGCCLEEKEKILVYEYMPNSSLYFHLFDDEKRKQLDWKVRLSIINGIARGLLYLHEDSRLRVIHRDLKTSNVLLDHDMNPKISDFGLAKAFEIGQNQANTKRIMGTYGYMAPEYAMQGLFSVKSDVFSFGVLVLETICGRKNNGFYLSEHDETLLLYAWRIWCEGKCLELMDPMLEKSFKASEVEKCIHIALLCVQENATYRPTMSDVVVMLGIDKLNLPKPKHPAFSVGRKFLGDEPKSKRSKNLLNTNVTISITLPR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00322 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Viun11g00322 646 FunFam Cysteine-rich receptor-like protein kinase 10 291 403 - -
Viun11g00322 646 FunFam cysteine-rich receptor-like protein kinase 10 404 606 - -
Viun11g00322 646 FunFam Cysteine-rich receptor-like protein kinase 28 27 126 - -
Viun11g00322 646 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Viun11g00322 646 SMART serkin_6 328 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00322 646 SUPERFAMILY Protein kinase-like (PK-like) 302 599 IPR011009 -
Viun11g00322 646 Gene3D Transferase(Phosphotransferase) domain 1 404 606 - -
Viun11g00322 646 ProSiteProfiles Protein kinase domain profile. 328 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00322 646 Pfam Protein tyrosine and serine/threonine kinase 332 598 IPR001245 GO:0004672|GO:0006468
Viun11g00322 646 Pfam Salt stress response/antifungal 146 236 IPR002902 -
Viun11g00322 646 Pfam Salt stress response/antifungal 31 124 IPR002902 -
Viun11g00322 646 ProSiteProfiles Gnk2-homologous domain profile. 25 127 IPR002902 -
Viun11g00322 646 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 70 624 - -
Viun11g00322 646 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Viun11g00322 646 FunFam Cysteine-rich receptor-like protein kinase 10 136 238 - -
Viun11g00322 646 CDD STKc_IRAK 334 599 - -
Viun11g00322 646 Gene3D Phosphorylase Kinase; domain 1 292 403 - -
Viun11g00322 646 Gene3D - 24 127 IPR038408 -
Viun11g00322 646 Gene3D - 136 238 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00322 Viun-Chr11 2688496 2691281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00322 4 646 Receptor kinase-like Gene Family AT4G05200 41.194 3.96e-170 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00322 PK_Tyr_Ser-Thr 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00322 - - gmx:100795922 867.84