LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00321	ATGTCGGGAAAAAAACCACACCTGAGATCAATATGCTATGGTTTCTTCTTATTGCTGAGTTTCAGACCACAAGTTACGAAGGCACAAACACCCATTTTTGTGGGAAGTAACTGTCAAAACACAACACAACAACCTCTCAGCAGTGTATACCAAACAAATCTTGAGGAAATGCTCAGATGGGCATCTTCAGACGCAGCCACAAGCAAAGGTTATAACCACAAAAACATAGACAACAACAGTCCTGTGTATGGCCTCTATGATTGTCGTGGTGATGTTGTCGGATACTTTTGTCAATTCTGTGTCTCTACTGCTGCCCAGGAAGCACCTCAGCGCTGCCCCAACAGGGTCTCTGCTATGGTTTGGTATGAATTCTGCATTCTAAGGTACTCCGACGAGAACTTTTATGGGACAGTTTTCACAAACCCAACATGGCATTCTCTTGGAGAGAAAAATGTATCCAAAACTGAACATATTCAGAAAGGTTATGATTTTGTGAGAAGTTTGATCAGAAAAGCAACTAAAGAGACTAACCAGTTGTTTTATATGGATTCCTTTAATTTGAGTTCCACTGAGAGAAGGTATGGCTCGGTGCAATGCACTAGAGATCTCACAAATGAAGGGTGCAGACAGTGTCTGGAGACCATATTAGCCCAAGTTGCCGAATGTTGTGAACAGAAATTAGGATGGGCGATTTGGACTGAAAGTTGTGCCATAAAGTATGATGATCATATGTTCTATCAAACATCTTCGGTTGCTGAGCCTAATCCGAAATTAGCTAAACAAGGGGGCAATAACAGGTCAAAAATCTTGATTATTAGCTTCAGTGTGACGGGGTCGATAACTGTACTGTGTTTGAGTGTATATTGGTGGTGGTGTAGAACTAGAAAAGATGGGTTGATACCTCGTGCCATTCGTCTATCATCATATCACAATATTCAAACTGAGGACAAACTGAATCCAGACCTTCCTACTATCCCATTAATCACAATTCTACAAAGTACTGCTAACTTCTCTGAAGTATCAAAACTGGGCGAAGGTGGATTTGGCCCAGTGTACAAGGGAATTCTGCCTGATGGAAGACAAATTGCAGTTAAAAGGTTGTCACAATTTTCTGGTCAAGGCTCAGAGGAGTTCGATAATGAAGTAATGCTTATAGCTAAGCTGCAACATCGCAACCTTGTGAGACTTCTTGCATGTTGCTTGGAGGAAAATGAAAAGATACTAATTTATGAGTATTTGCCTAATAAAAGCCTCGACTTTCACCTCTTTGATGACGAGAGAAAAAAGCATTTTGATTGGAAATTAAGATTAAGTATTATCAATGGAATAGCAAGAGGTGTTTTATACCTTCATGAGGACTCTCGACTGAAAGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCCTGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAAAGGACAGAACCAGGCAAATACAAAACGAGTAATAGGCACTTATGGATACATGGCTCCCGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTCGGAGTTCTCGTCCTAGAAATCATTTGTGGGAGAAAGAATAGCGGATTCTATCTGTCAGAGCATGGTCAGACTCTTCTGTTGTATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAAATGATGGATCCAACGCTGGAAAATTCCTTCGTAGGCAGTGAAGTTGAGAGATGCATACAGATTGGCTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGATCAAGCATGTCTGATGTTGTTGTGATGTTGGCAAGTGAGGGAATGGTCCTTCCAAAACCCAAGCACCCTCCGTTTTCGATAGGAAGAATTACCTTAGTGGAATTATCTACATCAAACAGTTCCAAGAATCTTTCCATTAATGATGTAACAACCTCTGTTACTATACCGAGGTAA	1968	0.4029	MSGKKPHLRSICYGFFLLLSFRPQVTKAQTPIFVGSNCQNTTQQPLSSVYQTNLEEMLRWASSDAATSKGYNHKNIDNNSPVYGLYDCRGDVVGYFCQFCVSTAAQEAPQRCPNRVSAMVWYEFCILRYSDENFYGTVFTNPTWHSLGEKNVSKTEHIQKGYDFVRSLIRKATKETNQLFYMDSFNLSSTERRYGSVQCTRDLTNEGCRQCLETILAQVAECCEQKLGWAIWTESCAIKYDDHMFYQTSSVAEPNPKLAKQGGNNRSKILIISFSVTGSITVLCLSVYWWWCRTRKDGLIPRAIRLSSYHNIQTEDKLNPDLPTIPLITILQSTANFSEVSKLGEGGFGPVYKGILPDGRQIAVKRLSQFSGQGSEEFDNEVMLIAKLQHRNLVRLLACCLEENEKILIYEYLPNKSLDFHLFDDERKKHFDWKLRLSIINGIARGVLYLHEDSRLKVIHRDLKASNVLLDPEMNPKISDFGLARAFEKGQNQANTKRVIGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNSGFYLSEHGQTLLLYAWRIWCEGKCLEMMDPTLENSFVGSEVERCIQIGLLCVQEDAKDRSSMSDVVVMLASEGMVLPKPKHPPFSIGRITLVELSTSNSSKNLSINDVTTSVTIPR	655

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00321	655	FunFam	Cysteine-rich receptor-like protein kinase 28	34	133	-	-
	Viun11g00321	655	ProSiteProfiles	Protein kinase domain profile.	337	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00321	655	Pfam	Protein tyrosine and serine/threonine kinase	341	605	IPR001245	GO:0004672\|GO:0006468
	Viun11g00321	655	SUPERFAMILY	Protein kinase-like (PK-like)	321	635	IPR011009	-
	Viun11g00321	655	FunFam	Liguleless narrow1	413	616	-	-
	Viun11g00321	655	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	302	412	-	-
	Viun11g00321	655	ProSiteProfiles	Gnk2-homologous domain profile.	140	245	IPR002902	-
	Viun11g00321	655	SMART	serkin_6	337	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00321	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Viun11g00321	655	Gene3D	Transferase(Phosphotransferase) domain 1	413	614	-	-
	Viun11g00321	655	ProSiteProfiles	Gnk2-homologous domain profile.	29	134	IPR002902	-
	Viun11g00321	655	FunFam	Cysteine-rich receptor-like protein kinase 10	143	245	-	-
	Viun11g00321	655	Gene3D	Phosphorylase Kinase; domain 1	302	412	-	-
	Viun11g00321	655	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	35	651	-	-
	Viun11g00321	655	Pfam	Salt stress response/antifungal	38	131	IPR002902	-
	Viun11g00321	655	Pfam	Salt stress response/antifungal	163	242	IPR002902	-
	Viun11g00321	655	Gene3D	-	32	134	IPR038408	-
	Viun11g00321	655	Gene3D	-	142	245	IPR038408	-
	Viun11g00321	655	CDD	STKc_IRAK	343	608	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00321	Viun-Chr11	2684213	2687161	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00321	13	655	Receptor kinase-like Gene Family	AT4G05200	39.970	3.47e-169	498

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00321		PK_Tyr_Ser-Thr	4.4e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00321	-		-	gmx:100795922	965.681