LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00319	ATGTTGGGAAAAAAACTACACCTGAGATCAATATGCTATGGTTTCTTCTTATTGCTGAGTTTCAGACCACAAGTTACGAAGGCACAAACACCCATTTTTGTGGGAAGTAACTGCCAAAACACAACCCAGCAACCTCTCAACAGTGTATACCAAACAAATCTTGAGGAAATGCTGAGATGGGCATCTTCAGACGCAGCCACAAGCAAAGGTTATAACTACAAAAGCATAGGAAACAAGAGTCCTGTGTATGGCCTCTATGATTGTCGTGGTGATGTTGTTGGATACTTTTGTCAGTTCTGTGTCTCTACTGCTGCCAAAGAAGCCCCTCAGCGCTGCCCCAACAGGGTCTCTGCTATGGTTTGGTATGACTTTTGCGTTCTAAGATACTCCAATGAGAGCTTTTATGGGACTGTTTTAACAAACATATCATGGCATGCTCTTGGAGAGAAAAATATATCAAACATTGAAGATATTCAGGAAGGTGATGATTTTGTGAGAGGTTTGATCAGAAAAGCAACAAAGGAAACTAACCAGTTGTTTTATATGGATGTCTTTAATTTGAGTTCCACTGAGAGAAGATATGGCTTGGTGCAATGTTCTAGAGATCTCACAAATGAAGGGTGCAGACAGTGTTTGGAGACTATATTAGCCAAAATTGCCAAATGTTGTGAACAGAAATTAGGATGGGTGATTTGGACTGGAAGTTGTGCAATAAAGTATGATGATCATATGTTCTACCAAACATCTTCAGTTGCTGAGCCTAATCCGAAATTAGCTAAACATGGAGGCAATAACAGGTCAAAAATCTTGATTATTAGCTTCAGTGTGACGGGGTCGATAACTGTACTATGTTTGAGTGTATATTGGTGGTGGTGTAGAACTAGAAAAGTTCATACAAGAACACGAAAATTTGACTATGTAGATGGGCTGATACCTCGTGCCATTCGTCTATCATCATATCACAATATTCAAACTGAGGACACACTGAATCCAGACCTTCCTACTATCCCATTAATCACAATTCTACAAAGTACTGCTAACTTCTCTGAAGTATCAAAACTGGGCGAAGGTGGATTTGGCCCAGTGTACAAGGGAGTTCTGCCTGATGGAAGACAAATTGCAGTTAAAAGGTTGTCACAATTTTCTGGTCAAGGCTCAGAGGAGTTCGATAATGAAGTAATGCTTATAGCTAAGCTGCAACATCGCAACCTTGTGAGACTTCTTGCATGTTGCTTGGAGGAAAATGAAAAGATACTGGTTTATGAATATTTGCCTAATAAAAGCCTCGACTTTCACCTCTTTGATGATGAGAGAAAAAAGCATTTTGATTGGAAATTAAGATTAAGCATTATAAATGGAATAGCAAGAGGTGTTTTATACCTTCATGAGGACTCTCGACTGAAAGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCCTGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAAAGGACAGAACCAGGCAAATACAAAACGAGTAATAGGCACTTATGGATACATGGCTCCCGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGTTTCGGAGTTCTCGTCCTAGAAATCATTTGTGGGAGAAAGAATAGTGGATTCTATCTGTCAGAGCATGGTCAGACTCTTCTGTTGTATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAAATGATGGATCCAACGATGGAAAATTCCTTCGTAGGGAGTGAAGTTGAGAGATGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGATCAAGCATGTCTGATGTTGTTGTGATGTTGGCAAGTGAGGGAATGATCCTTCCAAAACCCAAGCACCCTCCCCTTTCGATTGGAAGAATTACCTTAGTGGAACTCTCTACATCAAACAGTTCCAAGAATCTTTCCATTAATGATGTAACAACCTCTGTTACTATACCGAGATAA	2001	0.3943	MLGKKLHLRSICYGFFLLLSFRPQVTKAQTPIFVGSNCQNTTQQPLNSVYQTNLEEMLRWASSDAATSKGYNYKSIGNKSPVYGLYDCRGDVVGYFCQFCVSTAAKEAPQRCPNRVSAMVWYDFCVLRYSNESFYGTVLTNISWHALGEKNISNIEDIQEGDDFVRGLIRKATKETNQLFYMDVFNLSSTERRYGLVQCSRDLTNEGCRQCLETILAKIAKCCEQKLGWVIWTGSCAIKYDDHMFYQTSSVAEPNPKLAKHGGNNRSKILIISFSVTGSITVLCLSVYWWWCRTRKVHTRTRKFDYVDGLIPRAIRLSSYHNIQTEDTLNPDLPTIPLITILQSTANFSEVSKLGEGGFGPVYKGVLPDGRQIAVKRLSQFSGQGSEEFDNEVMLIAKLQHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDDERKKHFDWKLRLSIINGIARGVLYLHEDSRLKVIHRDLKASNVLLDPEMNPKISDFGLARAFEKGQNQANTKRVIGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNSGFYLSEHGQTLLLYAWRIWCEGKCLEMMDPTMENSFVGSEVERCIQIGLLCVQEDAKDRSSMSDVVVMLASEGMILPKPKHPPLSIGRITLVELSTSNSSKNLSINDVTTSVTIPR	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00319	666	SUPERFAMILY	Protein kinase-like (PK-like)	322	619	IPR011009	-
	Viun11g00319	666	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	36	662	-	-
	Viun11g00319	666	ProSiteProfiles	Protein kinase domain profile.	348	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00319	666	Pfam	Salt stress response/antifungal	38	131	IPR002902	-
	Viun11g00319	666	Pfam	Salt stress response/antifungal	178	242	IPR002902	-
	Viun11g00319	666	Gene3D	Phosphorylase Kinase; domain 1	313	423	-	-
	Viun11g00319	666	FunFam	Cysteine-rich receptor-like protein kinase 10	313	423	-	-
	Viun11g00319	666	SMART	serkin_6	348	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00319	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Viun11g00319	666	FunFam	Cysteine-rich receptor-like protein kinase 10	143	245	-	-
	Viun11g00319	666	FunFam	Liguleless narrow1	424	627	-	-
	Viun11g00319	666	Gene3D	Transferase(Phosphotransferase) domain 1	424	624	-	-
	Viun11g00319	666	FunFam	Cysteine-rich receptor-like protein kinase 28	34	133	-	-
	Viun11g00319	666	Gene3D	-	146	245	IPR038408	-
	Viun11g00319	666	Gene3D	-	32	134	IPR038408	-
	Viun11g00319	666	CDD	STKc_IRAK	354	619	-	-
	Viun11g00319	666	ProSiteProfiles	Gnk2-homologous domain profile.	32	134	IPR002902	-
	Viun11g00319	666	Pfam	Protein tyrosine and serine/threonine kinase	352	617	IPR001245	GO:0004672\|GO:0006468
	Viun11g00319	666	ProSiteProfiles	Gnk2-homologous domain profile.	140	245	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00319	Viun-Chr11	2670638	2673813	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00319	13	666	Receptor kinase-like Gene Family	AT4G05200	40.988	1.23e-170	502

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00319		PK_Tyr_Ser-Thr	2.9e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00319	-		-	gmx:100795922	958.747