LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00316	ATGGTGGAGAAAAATCTACACCTGAGATTAATATGCTATGGTTTTTTCTTACTGTTGAGTTTCAGACCACGTGTAACGAAGGCACAAACACCGATTTTTGTGGGAAGTAATTGCCAAAACACAACCCAACAACCTCTCAGCAGTGTATACCAAACAAATCTTGAGAGAATGCTCAGATGGGTATCTTCAGATGCATCAACAGGCAAAGGTTATAACTACAAAAGCATAGGAAACAACAGTCCTGTGTATGGTCTCTATGAATGTCGTGGTGACGTGGGTAGATACTTTTGTCAATTCTGTGTCTCTACGGCTGCCAAAGAAGCCCCTCACCGCTGCACCAATAGGGCCTCTGCTATGGTTTGGTATGATTTTTGCATTTTAAGGTACTCCAATGAGAACTTTTTCGGAACTGTTTTAACAAACCGATCATGGCATTCTCTTGGAGACAAAAATATATCTAACAAGGAAGATATTCAGAAAGGTGATGATTTTTTGAGAAGTTTGATCAGAAAAGCAACTAAGGGTACTACTAATCAGTTGTTTTATATGGATGTCTTTAATTTGAGTTCTACTGAGAGAAGGTATGGTTTGGTGCAATGCACTAGAGATCTCACAAATGAAGGGTGCAGACAGTGCTTGGAGACCATATTAGCACAAGTTGCAAAATGTTGTGAACATAAATTGGGATGGATGATTTGGACCGGAAGTTGTTTCATAAAGTATGATGATCACATGTTTTACCAAAAATCTTCAGTTGCTGAGCCTAATCTGCAACTTGTTACACCTAAACAAGGGGGCAATAATAGGTCAAAAATCTTGACTATTAGCTTCAGTGTGACGGGGTCAATAACTGTTCTATGTTTGAGCGTATATTGGTGCAGGAATAGAACTAGGAAAGATGGGTTGATAACTCGTGCCATTCGTCTATCATCATATCACAATATTCAAACTGAGGATACACTGAATCCAGACCTTCCTACTATCCCATTAATCACTATTCTACAAAGTACTGATAAGTTCTCTGAAGTATCAAAACTGGGGGAAGGTGGATTTGGCCCAGTGTACAAGGGAATTCTGCCAGATGGAAGACAAATTGCAGTTAAAAGGCTGTCAAAATTTTCTGGTCAAGGTTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAACTCCAGCATCGCAACCTTGTGAGACTTCTTGCATGTTGCTTGGAGGAAAATGAAAAGATACTAGTTTATGAATATTTGCCTAATAAAAGCCTCGACTTTCACCTCTTTGATAATGAGAGAAAAAAGCATTTTGATTGGAAATTAAGATTAAGCATTATAAATGGAATAGCAAGAGGTATTTTATACCTTCACGAGGACTCTCGACTTAAAGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCCTGAAATGAATCCCAAAATATCAGATTTTGGACTGGCAAGGACATTTGAAAAAGGACAGAACCAGGCAAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTCGGAGTTCTAGTTCTAGAAATCATTTGCGGGAGAAAGAATAGCGGATTCTATCTCTCAGAGCATGGTCAGACTCTTCTGTTGTATGCTTGGAGAATATGGTGTGAAAGAAAATGTTTGCAAATGATGGATCCAACACTGGAAAAATCCTTTGTAGGAAGTGAAGTTGAGAGATGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACAATGTCTGATGTTGTTGTAATGTTGGCAAGTGACGCAATGGCCCTTCCAGAACCCAAGCATCCACCATTTTCAGTTGGAAGAACGACCTTAGAGGACTTCTCCACACCAAAAAGTTCCAAGAATCTTTCCATTAATGATGCAACAACCTCTATTACTATACCGAGGTAA	1977	0.388	MVEKNLHLRLICYGFFLLLSFRPRVTKAQTPIFVGSNCQNTTQQPLSSVYQTNLERMLRWVSSDASTGKGYNYKSIGNNSPVYGLYECRGDVGRYFCQFCVSTAAKEAPHRCTNRASAMVWYDFCILRYSNENFFGTVLTNRSWHSLGDKNISNKEDIQKGDDFLRSLIRKATKGTTNQLFYMDVFNLSSTERRYGLVQCTRDLTNEGCRQCLETILAQVAKCCEHKLGWMIWTGSCFIKYDDHMFYQKSSVAEPNLQLVTPKQGGNNRSKILTISFSVTGSITVLCLSVYWCRNRTRKDGLITRAIRLSSYHNIQTEDTLNPDLPTIPLITILQSTDKFSEVSKLGEGGFGPVYKGILPDGRQIAVKRLSKFSGQGSEEFNNEVMFIAKLQHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDNERKKHFDWKLRLSIINGIARGILYLHEDSRLKVIHRDLKASNVLLDPEMNPKISDFGLARTFEKGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNSGFYLSEHGQTLLLYAWRIWCERKCLQMMDPTLEKSFVGSEVERCIQIGLLCVQEDAKDRPTMSDVVVMLASDAMALPEPKHPPFSVGRTTLEDFSTPKSSKNLSINDATTSITIPR	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00316	658	Gene3D	-	32	134	IPR038408	-
	Viun11g00316	658	Gene3D	-	143	246	IPR038408	-
	Viun11g00316	658	SMART	serkin_6	340	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00316	658	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	37	653	-	-
	Viun11g00316	658	ProSiteProfiles	Protein kinase domain profile.	340	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00316	658	CDD	STKc_IRAK	346	611	-	-
	Viun11g00316	658	FunFam	Cysteine-rich receptor-like protein kinase 10	304	415	-	-
	Viun11g00316	658	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	461	473	IPR008271	GO:0004672\|GO:0006468
	Viun11g00316	658	Gene3D	Phosphorylase Kinase; domain 1	303	415	-	-
	Viun11g00316	658	Pfam	Salt stress response/antifungal	38	131	IPR002902	-
	Viun11g00316	658	Pfam	Salt stress response/antifungal	163	243	IPR002902	-
	Viun11g00316	658	FunFam	Cysteine-rich receptor-like protein kinase 10	143	246	-	-
	Viun11g00316	658	Gene3D	Transferase(Phosphotransferase) domain 1	416	618	-	-
	Viun11g00316	658	Pfam	Protein tyrosine and serine/threonine kinase	344	610	IPR001245	GO:0004672\|GO:0006468
	Viun11g00316	658	ProSiteProfiles	Gnk2-homologous domain profile.	29	134	IPR002902	-
	Viun11g00316	658	FunFam	Cysteine-rich receptor-like protein kinase 28	34	133	-	-
	Viun11g00316	658	ProSiteProfiles	Gnk2-homologous domain profile.	140	246	IPR002902	-
	Viun11g00316	658	FunFam	Liguleless narrow1	416	619	-	-
	Viun11g00316	658	SUPERFAMILY	Protein kinase-like (PK-like)	325	639	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00316	Viun-Chr11	2651994	2661423	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00316	13	658	Receptor kinase-like Gene Family	AT4G05200	41.864	1.49e-173	509

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00316		PK_Tyr_Ser-Thr	6.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00316	-		-	gmx:100795922	945.266