Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00315 ATGGTGGGAAAAAAACTACACCTGAGATCAATATGCTATGGTTTCCACTTGTTGCTGTTGCTGAGTTTCAGACCACATGTTACGAAGGCACAAACACCCATTTTTGTGGGAAGCAACTGCCAAAACACAACCCAGCAGCCTCTCAACAGTGTATACCAAACAAATCTTGAGGAAATGCTCAGATGGGCATCTTCAGATGCAGCCACAAGCAAAGGTTATAACTACAAAAGCATAGGCAACAACAGTCCTGTGTATGGCCTCTATGATTGTCGTGGTGATGTTGTCGGATACTTTTGTCAATTCTGTGTCTCTACTGCTGCCAAAGAAGCCCCTCAGCGCTGCCCCAACAGGGTCTCTGCTATGGTTTGGTATGACTTTTGCGTTCTAAGATACTCCAATGAGAGCTTTTATGGGACTGTTTTAACAAATCCGTCATGGCATGCTCTTGGAGAGAAAAACATATCCAATATGGAAGATATTCAGAAAGCTAAACAAGGGGGCAATAATAGGTCAAAAATCTTGATTATTAGCTTCAGTGTGACGGGGTCAATAACTGTACTATGTTTGAGTGTATATTGGTGGTGGTGTAGAACTAGAAAAGATGGGCTGATATCTCGTGTCGTTCGTCTATCATCATATCACAATGTTCAAACTGAGGAAACACTGAATTCAGACCTTCCTACTATACCATTAATCACAATTCTACAAAGTACTGATAACTTTTCTGAAGTATCAAAACTGGGAGAAGGTGGATTTGGCCCAGTATACAAGGGAATTCTGCCAGATGGAAGACAAATTGCAGTTAAAAGGCTGTCAAAATTTTCTGGTCAAGGTTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAACTCCAGCATCGCAACCTTGTGAGACTTCTTGCATGTTGCTTGGAGGAAAATGAAAAGATACTAGTTTATGAATATTTGCCTAATAAAAGCCTCGACTTTCACCTGTTTGATAATGAGAGAAAAAAGCATTTTGATTGGAAATTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCACGAGGATTCTCGACTTAAAGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCCTGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGACATTTGAAAAAGGACAGAACCAGGCAAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTCGGAGTTCTAGTTCTAGAAATCATTTGCGGGAGAAAGAATAGCGGATTCTATCTCTCAGAGCATGGTCAGACTCTTCTGTTGTATGCTTGGAGAATATGGTGTGAAAGAAAATGTTTGCAAATGATGGATCCAACACTGGAAAAATCCTTTGTAGGAAGTGAAGTTGAGAGATGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACCATGTCTGATGTTGTTGTAATGTTGGCAAGTGACGCAATGACCCTTCTAGAACCCAAGCACCCACCATTTTCAGTTGGAAGAACGACCTTAGAGGAGTTCTCTACATCAAAAAGTTCCAAGAATCTTTCCATTAATGATGCAACAACCTCTATTACTATACCGAGGTAA 1680 0.3952 MVGKKLHLRSICYGFHLLLLLSFRPHVTKAQTPIFVGSNCQNTTQQPLNSVYQTNLEEMLRWASSDAATSKGYNYKSIGNNSPVYGLYDCRGDVVGYFCQFCVSTAAKEAPQRCPNRVSAMVWYDFCVLRYSNESFYGTVLTNPSWHALGEKNISNMEDIQKAKQGGNNRSKILIISFSVTGSITVLCLSVYWWWCRTRKDGLISRVVRLSSYHNVQTEETLNSDLPTIPLITILQSTDNFSEVSKLGEGGFGPVYKGILPDGRQIAVKRLSKFSGQGSEEFNNEVMFIAKLQHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDNERKKHFDWKLRLSIINGIARGILYLHEDSRLKVIHRDLKASNVLLDPEMNPKISDFGLARTFEKGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNSGFYLSEHGQTLLLYAWRIWCERKCLQMMDPTLEKSFVGSEVERCIQIGLLCVQEDAKDRPTMSDVVVMLASDAMTLLEPKHPPFSVGRTTLEEFSTSKSSKNLSINDATTSITIPR 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00315 559 FunFam Liguleless narrow1 317 520 - -
Viun11g00315 559 Gene3D Phosphorylase Kinase; domain 1 203 316 - -
Viun11g00315 559 SUPERFAMILY Protein kinase-like (PK-like) 226 538 IPR011009 -
Viun11g00315 559 Gene3D - 34 136 IPR038408 -
Viun11g00315 559 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 45 554 - -
Viun11g00315 559 ProSiteProfiles Protein kinase domain profile. 241 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00315 559 SMART serkin_6 241 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00315 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Viun11g00315 559 Pfam Protein tyrosine and serine/threonine kinase 245 511 IPR001245 GO:0004672|GO:0006468
Viun11g00315 559 ProSiteProfiles Gnk2-homologous domain profile. 34 136 IPR002902 -
Viun11g00315 559 Pfam Salt stress response/antifungal 40 133 IPR002902 -
Viun11g00315 559 FunFam Cysteine-rich receptor-like protein kinase 28 36 135 - -
Viun11g00315 559 Gene3D Transferase(Phosphotransferase) domain 1 317 521 - -
Viun11g00315 559 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 206 316 - -
Viun11g00315 559 CDD STKc_IRAK 247 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00315 Viun-Chr11 2646966 2650731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00315 84 559 Receptor kinase-like Gene Family AT4G05200 43.943 1.29e-135 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00315 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00315 - - var:108339140 710.294