LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00314	ATGGTGGGAAAAAAACTACACCTGAGATCAATATGCTATGGTTTCCACTTGTTGCTGTTGCTGAGTTTCAGACCACATGTTACGAAGGCACAAACACCCATTTTTGTGGGAAGCAACTGCCAAAACACAACCCAGCAGCCTCTCAACAGTGTATACCAAACAAATCTTGAGGAAATGCTCAGATGGGCATCTTCAGATGCAGCCACAAGCAAAGGTTATAACTACAAAAGCATAGGCAACAACAGTCCTGTGTATGGCCTCTATGATTGTCGTGGTGATGTTGTCGGATACTTTTGTCAATTCTGTGTCTCTACTGCTGCCAAAGAAGCCCCTCAGCGCTGCCCCAACAGGGTCTCTGCTATGGTTTGGTATGACTTTTGCGTTCTAAGATACTCCAATGAGAGCTTTTATGGGACTGTTTTAACAAATCCGTCATGGCATGCTCTTGGAGAGAAAAACATATCCAATATGGAAGATATTCAGAAAGGTAATGATTTTATGAGAAGTTTGATCAGAAAAGCAACTAAGGAGACTAACCAGTTGTTTTATATGGATGTCTTTAATTTGAGTTCCACTGAGAGAAGATATGGCTTGGTGCAATGTTCTAGAGATCTCACAAATGAAGGGTGCACACAGTGTTTGGAGACCATATTAGCCCAAGTTGCCAAATGTTGTGAACATAAATTGGGATGGTCGATTTGGACCGGAAGTTGTGTGATAAAGTATGACGATTATATGTTCTACCAAACATCTTTAGTTGCTGAACCTAATCTTCATATAGCTAAACAAGGGGGCAATAATAGGTCAAAAATCTTGATTATTAGCTTCAGTGTGACGGGGTCAATAACTGTACTATGTTTGAGTGTATATTGGTGGTGGTGTAGAACTAGAAAAGATGGGCTGATATCTCGTGTCGTTCGTCTATCATCATATCACAATGTTCAAACTGAGGAAACACTGAATTCAGACCTTCCTACTATACCATTAATCACAATTCTACAAAGTACTGATAACTTTTCTGAAGTATCAAAACTGGGAGAAGGTGGATTTGGCCCAGTATACAAGGGAATTCTGCCAGATGGAAGACAAATTGCAGTTAAAAGGCTGTCAAAATTTTCTGGTCAAGGTTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAACTCCAGCATCGCAACCTTGTGAGACTTCTTGCATGTTGCTTGGAGGAAAATGAAAAGATACTAGTTTATGAATATTTGCCTAATAAAAGCCTCGACTTTCACCTGTTTGATAATGAGAGAAAAAAGCATTTTGATTGGAAATTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCACGAGGATTCTCGACTTAAAGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCCTGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGACATTTGAAAAAGGACAGAACCAGGCAAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCTGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTCGGAGTTCTAGTTCTAGAAATCATTTGCGGGAGAAAGAATAGCGGATTCTATCTCTCAGAGCATGGTCAGACTCTTCTGTTGTATGCTTGGAGAATATGGTGTGAAAGAAAATGTTTGCAAATGATGGATCCAACACTGGAAAAATCCTTTGTAGGAAGTGAAGTTGAGAGATGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACCATGTCTGATGTTGTTGTAATGTTGGCAAGTGACGCAATGACCCTTCTAGAACCCAAGCACCCACCATTTTCAGTTGGAAGAACGACCTTAGAGGAGTTCTCTACATCAAAAAGTTCCAAGAATCTTTCCATTAATGATGCAACAACCTCTATTACTATACCGAGGTAA	1974	0.3916	MVGKKLHLRSICYGFHLLLLLSFRPHVTKAQTPIFVGSNCQNTTQQPLNSVYQTNLEEMLRWASSDAATSKGYNYKSIGNNSPVYGLYDCRGDVVGYFCQFCVSTAAKEAPQRCPNRVSAMVWYDFCVLRYSNESFYGTVLTNPSWHALGEKNISNMEDIQKGNDFMRSLIRKATKETNQLFYMDVFNLSSTERRYGLVQCSRDLTNEGCTQCLETILAQVAKCCEHKLGWSIWTGSCVIKYDDYMFYQTSLVAEPNLHIAKQGGNNRSKILIISFSVTGSITVLCLSVYWWWCRTRKDGLISRVVRLSSYHNVQTEETLNSDLPTIPLITILQSTDNFSEVSKLGEGGFGPVYKGILPDGRQIAVKRLSKFSGQGSEEFNNEVMFIAKLQHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDNERKKHFDWKLRLSIINGIARGILYLHEDSRLKVIHRDLKASNVLLDPEMNPKISDFGLARTFEKGQNQANTKRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGRKNSGFYLSEHGQTLLLYAWRIWCERKCLQMMDPTLEKSFVGSEVERCIQIGLLCVQEDAKDRPTMSDVVVMLASDAMTLLEPKHPPFSVGRTTLEEFSTSKSSKNLSINDATTSITIPR	657

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00314	657	FunFam	Cysteine-rich receptor-like protein kinase 28	36	135	-	-
	Viun11g00314	657	Gene3D	Transferase(Phosphotransferase) domain 1	415	618	-	-
	Viun11g00314	657	ProSiteProfiles	Protein kinase domain profile.	339	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00314	657	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	38	652	-	-
	Viun11g00314	657	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Viun11g00314	657	FunFam	Liguleless narrow1	415	618	-	-
	Viun11g00314	657	Gene3D	Phosphorylase Kinase; domain 1	301	414	-	-
	Viun11g00314	657	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	304	414	-	-
	Viun11g00314	657	Pfam	Protein tyrosine and serine/threonine kinase	343	609	IPR001245	GO:0004672\|GO:0006468
	Viun11g00314	657	SMART	serkin_6	339	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00314	657	FunFam	Cysteine-rich receptor-like protein kinase 10	145	247	-	-
	Viun11g00314	657	ProSiteProfiles	Gnk2-homologous domain profile.	34	136	IPR002902	-
	Viun11g00314	657	CDD	STKc_IRAK	345	610	-	-
	Viun11g00314	657	SUPERFAMILY	Protein kinase-like (PK-like)	324	636	IPR011009	-
	Viun11g00314	657	Pfam	Salt stress response/antifungal	164	245	IPR002902	-
	Viun11g00314	657	Pfam	Salt stress response/antifungal	40	133	IPR002902	-
	Viun11g00314	657	Gene3D	-	147	247	IPR038408	-
	Viun11g00314	657	Gene3D	-	34	136	IPR038408	-
	Viun11g00314	657	ProSiteProfiles	Gnk2-homologous domain profile.	142	247	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00314	Viun-Chr11	2646966	2650731	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00314	10	657	Receptor kinase-like Gene Family	AT4G05200	42.059	1.50e-177	520

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00314		PK_Tyr_Ser-Thr	6.7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00314	-		-	gmx:100795922	973.77