Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00313 ATGATAGAAATGCAAACACTATGCTTTACTTTCATGTTGCTGCTGAATTTCAGATCATTCATTACAAAGGCTGAGGAAGAGGTATACCTGGGAAGTAACTGCCATAACACCACCCAACAAACACTCAGCAGTGAATACCAAAGCAACCTTGATAAAATCCTGGCCTGGATGCCCTCTGATGCAGCCAAAAGCAGTGGTTATAACCTCACAACCATAGGCACCAACAATAGCTCTGTGTATGGCCTCTATGATTGTGGGGGTGGCTTGGCTGGATACTTTTGTCAATTTTGTATTGCCACTGCTGCAAGAGAAGCCCCTCAGCTCTGCTCCAATAGGGAGTCTGCTGTGGTGTGGAATGATTACTGCGTTATAAGGTACTCAAATGAAAACTTCTTTGGGAAAGCTATGACATACCCAACATGGCATACTATTGGAACAAAAAACATATCCAACACGTCAGAGATTCAGACAGGTGAGGATTTTGTGAGAAGTATGATCAGAAAAGCAACTAATGAAACTAACCTGTTGTACTGTAAGGATGGCTTCAATTTGAGTGCCACTGAGAGTAGGTATGGCGTGGTGCAATGCACCAGAGATCTCACAAATGAAGGGTGCAGACAGTGTTTGGAGGACATACTAGCTGAAGTTCCCACATGTTGTGAACAAAAAATAGCATGGTTTATTTGGTCTGGAAGTTGTTTGATAAGGTATGATGATCATATGTTCTACCTTCTTAACACCGAACCACCTTCAGCTCCAGCGCCCAATACACAAGGTGAATCTGAATCCATTTTATATTTACGAACAAATATTAAACGGCTTCCTCTACCTTTATTTCCCAAAAATCAACCAGAAGAAATGGGGAACACGGACCTGCCTAGAATCCCATTAATCACAATTCAGAAGAGTACTGACAACTTTTCAGAAGAATCTAAATTAGGGGAAGGTGGATTCGGCTCCGTTTACAAGGGAACTCTGCCTGATGGAAGGCAAATTGCAGTAAAAAGACTCTCAGAATTTTCTGGTCAAGGTTCAGAGGAATTCAATAATGAAGTAATGTTTATAGCTAAACTGAGGCATCGCAACCTTGTAAGACTTTTGGCATGTTGCTCAGAGGGGAATGAAAAGATACTTGTATATGAGTATTTGCCGAATAAAAGTCTCAACTTTCACCTATTTGATGTTGAGAAAAGAAAACAATTCGACTGGAAACTAAGATTAAGTATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCATGAGGACTCACAACTGAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTAATAGACCATGACATGAATCCCAAAATATCAGATTTTGGACTGGCAAGAGCATTTGAAATAGGTCAGAACCAGGCAAAAACAAAACGAGTATTTGGCACTTATGGATACATGGCTCCTGAGTATGCTATGGGAGGGCTATTTTCAGTCAAATCTGATGTCTTTAGCTTTGGAGTTCTCGTTCTAGAAATCATTTCTGGGAGAAAGAATGGTGGATTATACCTGTCAGAGGATCTAACTCTTCTTTCATATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAATTGATGGATCCAATGCTCGAAAAATCCTTCATAAGCGGTGAAGTAGAGAGGTGCATCCAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACCATGTCCAATGTTGCTGTAATGATAGCGAGTGACACAGTGGTCCTTCCAAAACCCAAACATCCAGCATTTTCAGTTGGAAGATTGACCTCAGAGGAAGTCTATACATCAAGAAGTTGTAAAAATCTTTCCATTAATGATATAACATCATCTATTACTTTACCGAGGTAA 1875 0.3995 MIEMQTLCFTFMLLLNFRSFITKAEEEVYLGSNCHNTTQQTLSSEYQSNLDKILAWMPSDAAKSSGYNLTTIGTNNSSVYGLYDCGGGLAGYFCQFCIATAAREAPQLCSNRESAVVWNDYCVIRYSNENFFGKAMTYPTWHTIGTKNISNTSEIQTGEDFVRSMIRKATNETNLLYCKDGFNLSATESRYGVVQCTRDLTNEGCRQCLEDILAEVPTCCEQKIAWFIWSGSCLIRYDDHMFYLLNTEPPSAPAPNTQGESESILYLRTNIKRLPLPLFPKNQPEEMGNTDLPRIPLITIQKSTDNFSEESKLGEGGFGSVYKGTLPDGRQIAVKRLSEFSGQGSEEFNNEVMFIAKLRHRNLVRLLACCSEGNEKILVYEYLPNKSLNFHLFDVEKRKQFDWKLRLSIINGIARGILYLHEDSQLRVIHRDLKASNVLIDHDMNPKISDFGLARAFEIGQNQAKTKRVFGTYGYMAPEYAMGGLFSVKSDVFSFGVLVLEIISGRKNGGLYLSEDLTLLSYAWRIWCEGKCLELMDPMLEKSFISGEVERCIQIGLLCVQEDAKDRPTMSNVAVMIASDTVVLPKPKHPAFSVGRLTSEEVYTSRSCKNLSINDITSSITLPR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00313 624 ProSiteProfiles Gnk2-homologous domain profile. 137 242 IPR002902 -
Viun11g00313 624 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Viun11g00313 624 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 618 - -
Viun11g00313 624 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Viun11g00313 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Viun11g00313 624 FunFam Cysteine-rich receptor-like protein kinase 10 275 382 - -
Viun11g00313 624 FunFam cysteine-rich receptor-like protein kinase 10 383 584 - -
Viun11g00313 624 ProSiteProfiles Protein kinase domain profile. 307 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00313 624 Pfam Salt stress response/antifungal 34 128 IPR002902 -
Viun11g00313 624 Pfam Salt stress response/antifungal 174 239 IPR002902 -
Viun11g00313 624 Pfam Protein tyrosine and serine/threonine kinase 310 574 IPR001245 GO:0004672|GO:0006468
Viun11g00313 624 Gene3D Phosphorylase Kinase; domain 1 279 382 - -
Viun11g00313 624 CDD STKc_IRAK 313 577 - -
Viun11g00313 624 SUPERFAMILY Protein kinase-like (PK-like) 287 576 IPR011009 -
Viun11g00313 624 Pfam Domain of unknown function (DUF3403) 579 624 IPR021820 GO:0004674
Viun11g00313 624 FunFam Cysteine-rich receptor-like protein kinase 28 30 130 - -
Viun11g00313 624 Gene3D - 27 131 IPR038408 -
Viun11g00313 624 Gene3D - 138 242 IPR038408 -
Viun11g00313 624 SMART serkin_6 307 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00313 624 Gene3D Transferase(Phosphotransferase) domain 1 383 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00313 Viun-Chr11 2639525 2642835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00313 9 624 Receptor kinase-like Gene Family AT4G05200 40.209 1.70e-163 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00313 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00313 - - var:108339140 952.97