Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00308 ATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTCGAAGTAGGACAGAACCAGGCAAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCTGAATATGCTATGGAAGGACTATTTTCCATGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGGAGAAAGAATGGTGAATTCTACCTGTCAGATGGTCAAAGTCTCCTTGTATACGCTTGGAGAATATGGTATGAAGGAAAATGTTTGGAATTGATGGATCCAATGCTGGAAAAATCCTTCAAAGGCAGTGAAGTAGGGAGGTGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAATGATAGACCAACCATGTCCGATGTTGTTGTCATGCTGGCGAGTGACACAGTGGCCATTCCAAAACCCAAATATCCAGCATTTTCAGTTGGAAGAATGGCCTCAAAGATAGTCTCTACATCAAGAACTTCCGAGAATCTTTCCATTCATGATATAACAACCTCCATCACTTTACCTAGGTAA 546 0.4029 MNPKISDFGLARAFEVGQNQANTKRVMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIICGRKNGEFYLSDGQSLLVYAWRIWYEGKCLELMDPMLEKSFKGSEVGRCIQIGLLCVQEDANDRPTMSDVVVMLASDTVAIPKPKYPAFSVGRMASKIVSTSRTSENLSIHDITTSITLPR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00308 181 Gene3D Transferase(Phosphotransferase) domain 1 1 142 - -
Viun11g00308 181 ProSiteProfiles Protein kinase domain profile. 1 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00308 181 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 14 139 - -
Viun11g00308 181 Pfam Protein tyrosine and serine/threonine kinase 4 133 IPR001245 GO:0004672|GO:0006468
Viun11g00308 181 SUPERFAMILY Protein kinase-like (PK-like) 2 162 IPR011009 -
Viun11g00308 181 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 172 - -
Viun11g00308 181 Pfam Domain of unknown function (DUF3403) 136 181 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00308 Viun-Chr11 2615821 2624208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00308 1 181 Receptor kinase-like Gene Family AT4G23150 54.787 2.68e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00308 PK_Tyr_Ser-Thr 3.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00308 - - pvu:PHAVU_011G194300g 286.574