LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00307	ATGTTTCAATCATTGTGGCAAATAACAAAATTAAGCAAGCACTTCATGATAGGAACACAGGGAAAGGTGAGATCAATATGCTTTAGTTTCTTGTTATTACTGAGCTTCAAATCATTCAGTACAAAGGCCAAAGCACAGTCCCTGGGAAGTAACTGCGAAAACACCACCCAACAGACTCTCACCGGTGCATACCAAACCAACCTTGATAGAATCCTAACATGGATGTCCTCGGATGCAGGCACAAGCAATGGTTATAACCACACCACCATAGGCACCAATAGCTCTGTGTATGGCCTTTATGATTGTGGTGGTGATGCGGTTGGATACTTTTGTCAATTTTGTATTTCCACTGCTGCAAGAGAAGCCCCTCAGCTCTGCTCCAATAGGGAGTCTGCTGTGGTGTGGAATGATTACTGCATTTTAAGGTACTCAAATGAGGACTTCTTTGGGAAAGCTATGACATACCCAATATGGCATACTCTTGGAACAAAAAACATATCCAACACCACAGAGATTCAGATAGCTGAGGATTTTGTGAGAAGTTTGATCGGAAAGGCTACTAACGAAACCCACCAGTTGTACTATAAGGGTGGCTTCAATTTGAGTGCTACTGAGAGTAGGTATGGCGTGGTGCAATGCACCAGAGATCTCACAAATGAAGTGTGCAGACAGTGTTTGGAGGACATACTGACTGAAGTTCCCAAATGTTGTGAACAAAAAGTAACATGGATGGTTTGGTCTGGAAGTTGTATTATAAGGTATGATGATCATATGTTCTACCTTCTTGCTAACCAACCACCTTCAGCTCCCGCACCCAATCAGAAAACAGATAAACAAGGGGTTAATAACAGGACAAGAATATTGATCATTATCTTCAGTGTGATCGGGGCAATAATATGTTTCAGCCTATATTGCTTCTGGTACAGGAATAAGGTGAGAAAAGCTAATTATAAAGAAAATACGAGGGATGGAGTTAGAGAAGAAGAGCTTCCTCTACCTTCATTTCATAAAATTCAATCGGAGGAAACGTGGAACACAGACCTGCCTAGAATCCCATTTATCACAATTCTACATAGTACTGATAACTTTTCGCAAGCATCTAAATTAGGGGAAGGTGGATTCGGCCCTGTTTACAAGGGAAATCTACCTGATGGAAGACAAATTGCAGTCAAAAGACTGTCAAAATTTTCTGGTCAAGGCTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCCAAATTGAGGCATCGCAACCTTGTAAGACTTTTGGCATGTTGCTTAGAGGAAAATGAAAAAATTATCGTATATGAGTATTTGCCGAATAAAAGTCTCGACTTTCACTTATTTGATGTTGAGAAAAGAAAACAATTCGACTGGAAACTAAGATTAAGTATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCATGAGGACTCACAACTGAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTAATAGACCATGACATGAATCCCAAAATATCAGATTTTGGACTGGCAAGAGCATTTGAAATAGGTCAGAACCAGGCAAAAACAAAACGAGTATTTGGCACTTATGGATACATGGCTCCTGAGTATGCTATGGGAGGGCTATTTTCAGTCAAATCTGATGTCTTTAGCTTTGGAGTTCTCGTTCTAGAAATCATTTCTGGGAGAAAGAATGGTGGATTATACCTGTCAGAGGATCTAACTCTTCTTTCATATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAATTGATGGATCCAATGCTCGAAAAATCCTTCATAAGCGGTGAAGTAGAGAGGTGCATCCAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACCATGTCCAATGTTGCTGTAATGATAGCGAGTGACACAGTGGTCCTTCCAAAACCCAAACATCCAGCATTTTCAGTTGGAAGATTGACCTCAGAGGAAGTCTATACATCAAGAAGTTGTAAAAATCTTTCCATTAATGATATAACATCATCTATTACTTTACCGAGGTAA	2043	0.3955	MFQSLWQITKLSKHFMIGTQGKVRSICFSFLLLLSFKSFSTKAKAQSLGSNCENTTQQTLTGAYQTNLDRILTWMSSDAGTSNGYNHTTIGTNSSVYGLYDCGGDAVGYFCQFCISTAAREAPQLCSNRESAVVWNDYCILRYSNEDFFGKAMTYPIWHTLGTKNISNTTEIQIAEDFVRSLIGKATNETHQLYYKGGFNLSATESRYGVVQCTRDLTNEVCRQCLEDILTEVPKCCEQKVTWMVWSGSCIIRYDDHMFYLLANQPPSAPAPNQKTDKQGVNNRTRILIIIFSVIGAIICFSLYCFWYRNKVRKANYKENTRDGVREEELPLPSFHKIQSEETWNTDLPRIPFITILHSTDNFSQASKLGEGGFGPVYKGNLPDGRQIAVKRLSKFSGQGSEEFNNEVMFIAKLRHRNLVRLLACCLEENEKIIVYEYLPNKSLDFHLFDVEKRKQFDWKLRLSIINGIARGILYLHEDSQLRVIHRDLKASNVLIDHDMNPKISDFGLARAFEIGQNQAKTKRVFGTYGYMAPEYAMGGLFSVKSDVFSFGVLVLEIISGRKNGGLYLSEDLTLLSYAWRIWCEGKCLELMDPMLEKSFISGEVERCIQIGLLCVQEDAKDRPTMSNVAVMIASDTVVLPKPKHPAFSVGRLTSEEVYTSRSCKNLSINDITSSITLPR	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00307	680	FunFam	Cysteine-rich receptor-like protein kinase 28	48	147	-	-
	Viun11g00307	680	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	58	674	-	-
	Viun11g00307	680	Pfam	Protein tyrosine and serine/threonine kinase	366	630	IPR001245	GO:0004672\|GO:0006468
	Viun11g00307	680	CDD	STKc_IRAK	369	633	-	-
	Viun11g00307	680	SMART	serkin_6	363	639	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00307	680	Gene3D	Transferase(Phosphotransferase) domain 1	439	639	-	-
	Viun11g00307	680	FunFam	cysteine-rich receptor-like protein kinase 10	439	640	-	-
	Viun11g00307	680	SUPERFAMILY	Protein kinase-like (PK-like)	337	632	IPR011009	-
	Viun11g00307	680	Pfam	Domain of unknown function (DUF3403)	635	680	IPR021820	GO:0004674
	Viun11g00307	680	ProSiteProfiles	Gnk2-homologous domain profile.	46	148	IPR002902	-
	Viun11g00307	680	ProSiteProfiles	Gnk2-homologous domain profile.	154	259	IPR002902	-
	Viun11g00307	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	484	496	IPR008271	GO:0004672\|GO:0006468
	Viun11g00307	680	Gene3D	-	155	259	IPR038408	-
	Viun11g00307	680	Gene3D	-	44	148	IPR038408	-
	Viun11g00307	680	Pfam	Salt stress response/antifungal	176	256	IPR002902	-
	Viun11g00307	680	Pfam	Salt stress response/antifungal	52	145	IPR002902	-
	Viun11g00307	680	Gene3D	Phosphorylase Kinase; domain 1	331	438	-	-
	Viun11g00307	680	ProSiteProfiles	Protein kinase domain profile.	363	648	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00307	680	FunFam	Cysteine-rich receptor-like protein kinase 10	326	438	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00307	Viun-Chr11	2613394	2642556	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00307	28	680	Receptor kinase-like Gene Family	AT4G05200	39.794	1.32e-163	484

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00307		PK_Tyr_Ser-Thr	7.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00307	-		-	pvu:PHAVU_011G194300g	969.148