LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00306	ATGTTTCAATCATTGTGGCAAATAACAAAATTAAGCAAGCACTTCATGATAGGAACACAGGGAAAGGTGAGATCAATATGCTTTAGTTTCTTGTTATTACTGAGCTTCAAATCATTCAGTACAAAGGCCAAAGCACAGTCCCTGGGAAGTAACTGCGAAAACACCACCCAACAGACTCTCACCGGTGCATACCAAACCAACCTTGATAGAATCCTAACATGGATGTCCTCGGATGCAGGCACAAGCAATGGTTATAACCACACCACCATAGGCACCAATAGCTCTGTGTATGGCCTTTATGATTGTGGTGGTGATGCGGTTGGATACTTTTGTCAATTTTGTATTTCCACTGCTGCAAGAGAAGCCCCTCAGCTCTGCTCCAATAGGGAGTCTGCTGTGGTGTGGAATGATTACTGCATTTTAAGGTACTCAAATGAGGACTTCTTTGGGAAAGCTATGACATACCCAATATGGCATACTCTTGGAACAAAAAACATATCCAACACCACAGAGATTCAGATAGCTGAGGATTTTGTGAGAAGTTTGATCGGAAAGGCTACTAACGAAACCCACCAGTTGTACTATAAGGGTGGCTTCAATTTGAGTGCTACTGAGAGTAGGTATGGCGTGGTGCAATGCACCAGAGATCTCACAAATGAAGTGTGCAGACAGTGTTTGGAGGACATACTGACTGAAGTTCCCAAATGTTGTGAACAAAAAGTAACATGGATGGTTTGGTCTGGAAGTTGTATTATAAGGTATGATGATCATATGTTCTACCTTCTTGCTAACCAACCACCTTCAGCTCCCGCACCCAATCAGAAAACAGATAAACAAGGGGTTAATAACAGGACAAGAATATTGATCATTATCTTCAGTGTGATCGGGGCAATAATATGTTTCAGCCTATATTGCTTCTGGTACAGGAATAAGGTGAGAAAAGCTAATTATAAAGAAAATACGAGGGATGGAGTTAGAGAAGAGCTTCCTCTACCTTCATTTCATAAAATTCAATCGGAGGAAACGTGGAACACAGACCTGCCTAGAATCCCATTTATCACAATTCTACATAGTACTGATAACTTTTCGCAAGCATCTAAATTAGGGGAAGGTGGATTCGGCCCTGTTTACAAGGGAAATCTACCTGATGGAAGACAAATTGCAGTCAAAAGACTGTCAAAATTTTCTGGTCAAGGCTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCCAAATTGAGGCATCGCAACCTTGTAAGACTTTTGGCATGTTGCTTAGAGGAAAATGAAAAAATTATCGTATATGAGTATTTGCCGAATAAAAGTCTCGACTTTCACTTATTTGATGTTGAGAAAAGAAAACAATTCGACTGGAAACTAAGATTAAGTATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCATGAGGACTCACAACTGAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTAATAGACCATGACATGAATCCCAAAATATCAGATTTTGGACTGGCAAGAGCATTTGAAATAGGTCAGAACCAGGCAAAAACAAAACGAGTATTTGGCACTTATGGATACATGGCTCCTGAGTATGCTATGGGAGGGCTATTTTCAGTCAAATCTGATGTCTTTAGCTTTGGAGTTCTCGTTCTAGAAATCATTTCTGGGAGAAAGAATGGTGGATTATACCTGTCAGAGGATCTAACTCTTCTTTCATATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAATTGATGGATCCAATGCTCGAAAAATCCTTCATAAGCGGTGAAGTAGAGAGGTGCATCCAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACCATGTCCAATGTTGCTGTAATGATAGCGAGTGACACAGTGGTCCTTCCAAAACCCAAACATCCAGCATTTTCAGTTGGAAGATTGACCTCAGAGGAAGTCTATACATCAAGAAGTTGTAAAAATCTTTCCATTAATGATATAACATCATCTATTACTTTACCGAGGTAA	2040	0.3956	MFQSLWQITKLSKHFMIGTQGKVRSICFSFLLLLSFKSFSTKAKAQSLGSNCENTTQQTLTGAYQTNLDRILTWMSSDAGTSNGYNHTTIGTNSSVYGLYDCGGDAVGYFCQFCISTAAREAPQLCSNRESAVVWNDYCILRYSNEDFFGKAMTYPIWHTLGTKNISNTTEIQIAEDFVRSLIGKATNETHQLYYKGGFNLSATESRYGVVQCTRDLTNEVCRQCLEDILTEVPKCCEQKVTWMVWSGSCIIRYDDHMFYLLANQPPSAPAPNQKTDKQGVNNRTRILIIIFSVIGAIICFSLYCFWYRNKVRKANYKENTRDGVREELPLPSFHKIQSEETWNTDLPRIPFITILHSTDNFSQASKLGEGGFGPVYKGNLPDGRQIAVKRLSKFSGQGSEEFNNEVMFIAKLRHRNLVRLLACCLEENEKIIVYEYLPNKSLDFHLFDVEKRKQFDWKLRLSIINGIARGILYLHEDSQLRVIHRDLKASNVLIDHDMNPKISDFGLARAFEIGQNQAKTKRVFGTYGYMAPEYAMGGLFSVKSDVFSFGVLVLEIISGRKNGGLYLSEDLTLLSYAWRIWCEGKCLELMDPMLEKSFISGEVERCIQIGLLCVQEDAKDRPTMSNVAVMIASDTVVLPKPKHPAFSVGRLTSEEVYTSRSCKNLSINDITSSITLPR	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00306	679	FunFam	Cysteine-rich receptor-like protein kinase 28	48	147	-	-
	Viun11g00306	679	Gene3D	Transferase(Phosphotransferase) domain 1	438	638	-	-
	Viun11g00306	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	483	495	IPR008271	GO:0004672\|GO:0006468
	Viun11g00306	679	SUPERFAMILY	Protein kinase-like (PK-like)	336	631	IPR011009	-
	Viun11g00306	679	ProSiteProfiles	Gnk2-homologous domain profile.	46	148	IPR002902	-
	Viun11g00306	679	FunFam	Cysteine-rich receptor-like protein kinase 10	326	437	-	-
	Viun11g00306	679	SMART	serkin_6	362	638	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00306	679	ProSiteProfiles	Gnk2-homologous domain profile.	154	259	IPR002902	-
	Viun11g00306	679	ProSiteProfiles	Protein kinase domain profile.	362	647	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00306	679	FunFam	cysteine-rich receptor-like protein kinase 10	438	639	-	-
	Viun11g00306	679	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	58	673	-	-
	Viun11g00306	679	Gene3D	Phosphorylase Kinase; domain 1	330	437	-	-
	Viun11g00306	679	Gene3D	-	155	259	IPR038408	-
	Viun11g00306	679	Gene3D	-	44	148	IPR038408	-
	Viun11g00306	679	CDD	STKc_IRAK	368	632	-	-
	Viun11g00306	679	Pfam	Salt stress response/antifungal	176	256	IPR002902	-
	Viun11g00306	679	Pfam	Salt stress response/antifungal	52	145	IPR002902	-
	Viun11g00306	679	Pfam	Domain of unknown function (DUF3403)	634	679	IPR021820	GO:0004674
	Viun11g00306	679	Pfam	Protein tyrosine and serine/threonine kinase	365	629	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00306	Viun-Chr11	2613391	2642556	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00306	28	679	Receptor kinase-like Gene Family	AT4G05200	39.853	1.32e-163	484

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00306		PK_Tyr_Ser-Thr	7.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00306	-		-	pvu:PHAVU_011G194300g	969.533