LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00305	ATGAAACCAGTTCGCACTTTCTGTTTCATAAAACAAGGAAGTCGTGTGTCACTCAAAAACCTGAGCAACTACTCCATGATCGCAACTCAAACATGCTTTGGTTTCTTGCTATTGCTAAATTGGGGAACAGTAGTTACAAAGGCACAAACACAGATATATCTGGGAAGCAGTTGCCAAAACACCTCTCAAGAGCCTCTCAGCAGTGCATACCAGACCAATCTTGATAAGATCCTCACATGGATGTCCTCTGATGCAGCCACAAGCAAAGGCTATAACCACACCAGCATAGGCATCACCACCCCTGTGTATGGCCTCTATGAATGCCGTGGTGATGTTATCGGACACTTTTGTCAATTCTGTGTCTCCTTCGCAGCCAGAGAAGCCCCTAAACGCTGCCCCAATAGGGTATCTGCTATGGTGTGGTATGAGTACTGCATTCTAAGGTACTCTAATGAGAGCTTCTTTGGGAAAATTCTCACACACCCCACATGGCATGGGTTTGGAACAAAAAATATATCCAACATGGCAGAGGTTCACAAAGGTGAAGGTTTTGTGAAAAGTTTGATCAGAAAAGCAACTGAGGATACCAACCAGTTGTACTATTTGGGTGGCTTCAATTTGAGTTCCACTCAGAAAAGGTATGGCATGGTGCACTGCAGTAGAGATCTCTCAAAAGAAGGGTGCAGACAGTGTTTGGAGGCTTTATTAGCACAAGTTCATATATGTTGTGTACAAAAAATAGGATGGTTTATTTGGTCTGGAACTTGTATGATAAGGTACGATGATCAAATGTTTTACCTTCTTAACAACCAAACATCTTCAATTCCTGCGTCAAATCAGGAAACAGATAAACAAAGGGGTTATAGGAGGTCAAAAATCTTAATCATTAGCATCAGTGTGATGGGGTCAATAGTTCTACTATGTTTGAGCGTATATCACTTCTGGTACAGGAGAAGAGTTAGAAAAGATGGGGTTCGTCTATCTTCATTTCACAAAATTCAAGCAGAGGAGTCATGGACCACAGACCTGCCTATAATCCCATTAACCACAATTCTGCAGAGTACTGATAGCTTTTCAGAAGCATGTAAAGTAGGAGAAGGAGGATTTGGCACTGTTTACAAGGGAATTCTAGCAAATGGAACACAAATTGCAGTCAAAAGGCTCTCAAAGTTTTCAGGTCAAGGCTCGGAGGAGTTTAATAACGAAGTCCTGTTCATAGCTAATTTGCAACATCGCAATCTTGTGAGACTTTTGGCATGCTGCTTGGACCAAAATGAAAACATACTAGTATATGAGTATTTGCCGAATAAAAGTTTAGACTTTCACCTCTTTGATGATGAGAGGAGAAAGCAGTTTGATTGGAAACTAAGATTAAGGATTATCATTGGAATAGCAAGAGGTATTTTATACCTTCATGAGGACTCTAGAGTCACAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTGTTAGATCATGATATGAATCCAAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAATAGGACAGAACCAGGCGAACACAAAACGAGTAATGGGGACTTATGGATACATGGCTCCGGAGTATGTTATGCAAGGACTGTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAGATCATTTATGGGAGAAAGAACAATGGATTGTTTATGTCAGAAAATGGTCAAACTCTTCTTTTACATGCTTGGAGAACATGGGGTGCAGGAAAATGTTGGGAAGTGATTGATCCAATGCTTGAAAAATCCTTCTTAGGAAGTGAAGTTGAGAGGTGTATACACATTGGTTTGTTGTGTGTTCAAGAAGCTGCAAAAGATAGACCAACAATGTCTCATGTGGTTTTAATGCTGGCAAGTGATACAATGGTTCTTCCAAAACCCAAGCACCCTGCATTTTCAATTGGAATAATGGCCTCAGAGGAAGTGTATACATCAAAAAGTTCCAAGAATGTTTCCAATAATGATCTAACGATCTCTATTTCTTTACCTAGATGA	2031	0.4008	MKPVRTFCFIKQGSRVSLKNLSNYSMIATQTCFGFLLLLNWGTVVTKAQTQIYLGSSCQNTSQEPLSSAYQTNLDKILTWMSSDAATSKGYNHTSIGITTPVYGLYECRGDVIGHFCQFCVSFAAREAPKRCPNRVSAMVWYEYCILRYSNESFFGKILTHPTWHGFGTKNISNMAEVHKGEGFVKSLIRKATEDTNQLYYLGGFNLSSTQKRYGMVHCSRDLSKEGCRQCLEALLAQVHICCVQKIGWFIWSGTCMIRYDDQMFYLLNNQTSSIPASNQETDKQRGYRRSKILIISISVMGSIVLLCLSVYHFWYRRRVRKDGVRLSSFHKIQAEESWTTDLPIIPLTTILQSTDSFSEACKVGEGGFGTVYKGILANGTQIAVKRLSKFSGQGSEEFNNEVLFIANLQHRNLVRLLACCLDQNENILVYEYLPNKSLDFHLFDDERRKQFDWKLRLRIIIGIARGILYLHEDSRVTVIHRDLKASNVLLDHDMNPKISDFGLARAFEIGQNQANTKRVMGTYGYMAPEYVMQGLFSVKSDVFSFGVLVLEIIYGRKNNGLFMSENGQTLLLHAWRTWGAGKCWEVIDPMLEKSFLGSEVERCIHIGLLCVQEAAKDRPTMSHVVLMLASDTMVLPKPKHPAFSIGIMASEEVYTSKSSKNVSNNDLTISISLPR	676

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00305	676	FunFam	Cysteine-rich receptor-like protein kinase 10	321	433	-	-
	Viun11g00305	676	Gene3D	Transferase(Phosphotransferase) domain 1	434	636	-	-
	Viun11g00305	676	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	59	672	-	-
	Viun11g00305	676	ProSiteProfiles	Gnk2-homologous domain profile.	160	265	IPR002902	-
	Viun11g00305	676	CDD	STKc_IRAK	364	629	-	-
	Viun11g00305	676	ProSiteProfiles	Protein kinase domain profile.	358	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00305	676	SMART	serkin_6	358	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00305	676	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	479	491	IPR008271	GO:0004672\|GO:0006468
	Viun11g00305	676	SUPERFAMILY	Protein kinase-like (PK-like)	334	629	IPR011009	-
	Viun11g00305	676	ProSiteProfiles	Gnk2-homologous domain profile.	52	154	IPR002902	-
	Viun11g00305	676	FunFam	Cysteine-rich receptor-like protein kinase 28	54	153	-	-
	Viun11g00305	676	FunFam	cysteine-rich receptor-like protein kinase 10	434	636	-	-
	Viun11g00305	676	Pfam	Protein tyrosine and serine/threonine kinase	363	626	IPR001245	GO:0004672\|GO:0006468
	Viun11g00305	676	ProSitePatterns	Protein kinases ATP-binding region signature.	364	386	IPR017441	GO:0005524
	Viun11g00305	676	Pfam	Salt stress response/antifungal	58	151	IPR002902	-
	Viun11g00305	676	Pfam	Salt stress response/antifungal	205	262	IPR002902	-
	Viun11g00305	676	Gene3D	-	51	154	IPR038408	-
	Viun11g00305	676	Gene3D	-	165	265	IPR038408	-
	Viun11g00305	676	Gene3D	Phosphorylase Kinase; domain 1	321	433	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00305	Viun-Chr11	2608706	2611566	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00305	33	676	Receptor kinase-like Gene Family	AT4G05200	40.476	9.39e-165	487

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00305		PK_Tyr_Ser-Thr	8.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00305	-		-	gmx:100795922	893.649