Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00304 ATGTTTCAATCATTGTGGCAAATAACAAAATTAAGCAAGCACTTCATGATAGGAACACAGGGAAAGGTGAGATCAATATGCTTTAGTTTCTTGTTATTACTGAGTTTCAAATCATTCAGTACAAAGGCCAAAGCACAGTCCCTGGGAAGTAACTGCGAAAACACCACCCAACAGACTCTCACCGGTGCATACCAAACCAACCTTGATAGAATCCTAACATGGATGTCCTCGGATGCAGGCACAAGCAATGGTTATAACCACACCACCATAGGCACCAATAGCTCTGTGTATGGCCTTTATGATTGTGGTGGTGATGCGGTTGGATACTTTTGTCAATTTTGTATTTCCACTGCTGCAAGAGAAGCCCCTCAGCTCTGCTCCAATAGGGAGTCTGCTGTGGTGTGGAATGATTACTGCATTATAAGGTACTCAAATGAGGACTTCTTTGGGAAAGCTATGACATACCCAATATGGCATACTCTTGGAACAAAAAACATATCCAACACCACAGAGATTCAGATAGCTGAGGATTTTGTGAGAAGTTTGATCGGAAAGGCTACTAATGAAACCCACCAGTTGTACTATAAGGATGGCTTCAATTTGAGTGCCACTGAGAGTAGGTATGCCGTGGTGCAATGCACCAGAGATCTCACAAATGAAGGGTGCAGACAGTGTTTGGAGGACATACTGACTGAAGTTCCCAAATGTTGTGAACAAAAAGTAACATGGATGGTTTGGTCTGGAAGTTGTTTGATAAGGTATGATGATCATATGTTCTACCTTCTTGCCAACCAACCACCTTCAGCTCCCGCACCCAATCAGAAAACAGATAAACAAGGGGTTAATAACAGGACAAGAATATTGATCATTATCTTCAGTGTGATCGGGGCAATAATTGTACTATGTTTCAGCCTATATTGCATCTGGTACAGGAAAAGGGTGAGAAAAGCTAATTATAAAGAAAATACGAGGGATGGAGTTAGAGAAGAAGAGCTTCCTCTACCTTCATTTCATAAAATTCAATCGGAGGAAACGTGGAACACAGACCTGCCTAGAATTCCATTTATCACAATTTTACAGAGTACTGATAACTTTTCAGTAGCATCTAAATTAGGGGAAGGTGGATTCGGCCCTGTTTATAAGGGAAATCTACCTGATGGAAGGCAAATTGCAGTCAAAAGACTCTCAAAATTTTCTGGTCAAGGCTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCCAAATTGAGGCATCGCAACCTTGTAAGACTTTTGGCATGTTGCTTAGAGGAAAATGAAAAGATACTCGTATATGAGTATTTGCCGAATAAAAGTCTCGACTTTCACTTATTTGATGTTGAGAGAAGAAAACAATTCGATTGGAAACTAAGGTTAAGCATTATCCATGGAATAGCAAGAGGAATTTTATACCTTCACGAGGACTCTCAACTCAGAGTAATTCATAGAGATCTCAAAGCCAGCAACGTTCTACTAGACCTTGACATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTCGAAGTAGGACAGAACCAGGCAAATACAAAACGAGTAATGGGCACTTTTGGATACATGGCTCCTGAATATGCTATGGATGGACTATTTTCAGTGAAATCTGATATTTTCAGTTTTGGAGTTCTTGTTCTAGAAATCATTTGCGGGAGAAAGAACGGTGGATTCTACATGTCAGATGGTCAAACTCTCCTTGTATACGCTTGGAGAACATGGTCTGAAGGAAAATGTTTGGAAATGATGGATCCAATGCTGGAAAAGTCCTTTATAGGCAGTGAAGTAGAGAGGTGCATACAGATTGGTTTGTTGTGTGTTCAGGAAGATGCAAGAGATAGACCAACCATGTCGGATGTTCTTGTAATGCTGGCGAGTGACACAGTGGTCATTCCAAAACCCAAGCACCCAGCATTTTCAATCGGAAGGCTGGCCTCAGAGGAAGTCTCTACATCAAAAAGTTCCAAGAATTTTTCCGTTAATGATATAACATTCTCGATTAGTTTACCGAGGTAA 2049 0.4056 MFQSLWQITKLSKHFMIGTQGKVRSICFSFLLLLSFKSFSTKAKAQSLGSNCENTTQQTLTGAYQTNLDRILTWMSSDAGTSNGYNHTTIGTNSSVYGLYDCGGDAVGYFCQFCISTAAREAPQLCSNRESAVVWNDYCIIRYSNEDFFGKAMTYPIWHTLGTKNISNTTEIQIAEDFVRSLIGKATNETHQLYYKDGFNLSATESRYAVVQCTRDLTNEGCRQCLEDILTEVPKCCEQKVTWMVWSGSCLIRYDDHMFYLLANQPPSAPAPNQKTDKQGVNNRTRILIIIFSVIGAIIVLCFSLYCIWYRKRVRKANYKENTRDGVREEELPLPSFHKIQSEETWNTDLPRIPFITILQSTDNFSVASKLGEGGFGPVYKGNLPDGRQIAVKRLSKFSGQGSEEFNNEVMFIAKLRHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDVERRKQFDWKLRLSIIHGIARGILYLHEDSQLRVIHRDLKASNVLLDLDMNPKISDFGLARAFEVGQNQANTKRVMGTFGYMAPEYAMDGLFSVKSDIFSFGVLVLEIICGRKNGGFYMSDGQTLLVYAWRTWSEGKCLEMMDPMLEKSFIGSEVERCIQIGLLCVQEDARDRPTMSDVLVMLASDTVVIPKPKHPAFSIGRLASEEVSTSKSSKNFSVNDITFSISLPR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00304 682 FunFam cysteine-rich receptor-like protein kinase 10 441 642 - -
Viun11g00304 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Viun11g00304 682 ProSiteProfiles Gnk2-homologous domain profile. 154 259 IPR002902 -
Viun11g00304 682 ProSiteProfiles Protein kinase domain profile. 365 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00304 682 SUPERFAMILY Protein kinase-like (PK-like) 348 654 IPR011009 -
Viun11g00304 682 Gene3D - 44 148 IPR038408 -
Viun11g00304 682 Gene3D - 155 259 IPR038408 -
Viun11g00304 682 Gene3D Transferase(Phosphotransferase) domain 1 441 642 - -
Viun11g00304 682 Pfam Salt stress response/antifungal 52 145 IPR002902 -
Viun11g00304 682 Pfam Salt stress response/antifungal 176 256 IPR002902 -
Viun11g00304 682 ProSiteProfiles Gnk2-homologous domain profile. 46 148 IPR002902 -
Viun11g00304 682 SMART serkin_6 365 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00304 682 CDD STKc_IRAK 371 635 - -
Viun11g00304 682 FunFam Cysteine-rich receptor-like protein kinase 28 48 147 - -
Viun11g00304 682 Pfam Domain of unknown function (DUF3403) 637 682 IPR021820 GO:0004674
Viun11g00304 682 Pfam Protein tyrosine and serine/threonine kinase 367 633 IPR001245 GO:0004672|GO:0006468
Viun11g00304 682 FunFam Cysteine-rich receptor-like protein kinase 10 328 440 - -
Viun11g00304 682 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 58 678 - -
Viun11g00304 682 Coils Coil 682 682 - -
Viun11g00304 682 Gene3D Phosphorylase Kinase; domain 1 333 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00304 Viun-Chr11 2603365 2606562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00304 28 682 Receptor kinase-like Gene Family AT4G05200 40.849 8.19e-170 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00304 PK_Tyr_Ser-Thr 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00304 - - pvu:PHAVU_011G194300g 997.267