LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00303	ATGTTTCAATCATTGTGGCAAATAACAAAATTAAGCAAGCACTTCATGATAGGAACACAGGGAAAGGTGAGATCAATATGCTTTAGTTTCTTGTTATTACTGAGTTTCAAATCATTCAGTACAAAGGCCAAAGCACAGTCCCTGGGAAGTAACTGCGAAAACACCACCCAACAGACTCTCACCGGTGCATACCAAACCAACCTTGATAGAATCCTAACATGGATGTCCTCGGATGCAGGCACAAGCAATGGTTATAACCACACCACCATAGGCACCAATAGCTCTGTGTATGGCCTTTATGATTGTGGTGGTGATGCGGTTGGATACTTTTGTCAATTTTGTATTTCCACTGCTGCAAGAGAAGCCCCTCAGCTCTGCTCCAATAGGGAGTCTGCTGTGGTGTGGAATGATTACTGCATTATAAGGTACTCAAATGAGGACTTCTTTGGGAAAGCTATGACATACCCAATATGGCATACTCTTGGAACAAAAAACATATCCAACACCACAGAGATTCAGATAGCTGAGGATTTTGTGAGAAGTTTGATCGGAAAGGCTACTAATGAAACCCACCAGTTGTACTATAAGGATGGCTTCAATTTGAGTGCCACTGAGAGTAGGTATGCCGTGGTGCAATGCACCAGAGATCTCACAAATGAAGGGTGCAGACAGTGTTTGGAGGACATACTGACTGAAGTTCCCAAATGTTGTGAACAAAAAGTAACATGGATGGTTTGGTCTGGAAGTTGTTTGATAAGGTATGATGATCATATGTTCTACCTTCTTGCCAACCAACCACCTTCAGCTCCCGCACCCAATCAGAAAACAGATAAACAAGGGGTTAATAACAGGACAAGAATATTGATCATTATCTTCAGTGTGATCGGGGCAATAATTGTACTATGTTTCAGCCTATATTGCATCTGGTACAGGAAAAGGGTGAGAAAAGCTAATTATAAAGAAAATACGAGGGATGGAGTTAGAGAAGAGCTTCCTCTACCTTCATTTCATAAAATTCAATCGGAGGAAACGTGGAACACAGACCTGCCTAGAATTCCATTTATCACAATTTTACAGAGTACTGATAACTTTTCAGTAGCATCTAAATTAGGGGAAGGTGGATTCGGCCCTGTTTATAAGGGAAATCTACCTGATGGAAGGCAAATTGCAGTCAAAAGACTCTCAAAATTTTCTGGTCAAGGCTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCCAAATTGAGGCATCGCAACCTTGTAAGACTTTTGGCATGTTGCTTAGAGGAAAATGAAAAGATACTCGTATATGAGTATTTGCCGAATAAAAGTCTCGACTTTCACTTATTTGATGTTGAGAGAAGAAAACAATTCGATTGGAAACTAAGGTTAAGCATTATCCATGGAATAGCAAGAGGAATTTTATACCTTCACGAGGACTCTCAACTCAGAGTAATTCATAGAGATCTCAAAGCCAGCAACGTTCTACTAGACCTTGACATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTCGAAGTAGGACAGAACCAGGCAAATACAAAACGAGTAATGGGCACTTTTGGATACATGGCTCCTGAATATGCTATGGATGGACTATTTTCAGTGAAATCTGATATTTTCAGTTTTGGAGTTCTTGTTCTAGAAATCATTTGCGGGAGAAAGAACGGTGGATTCTACATGTCAGATGGTCAAACTCTCCTTGTATACGCTTGGAGAACATGGTCTGAAGGAAAATGTTTGGAAATGATGGATCCAATGCTGGAAAAGTCCTTTATAGGCAGTGAAGTAGAGAGGTGCATACAGATTGGTTTGTTGTGTGTTCAGGAAGATGCAAGAGATAGACCAACCATGTCGGATGTTCTTGTAATGCTGGCGAGTGACACAGTGGTCATTCCAAAACCCAAGCACCCAGCATTTTCAATCGGAAGGCTGGCCTCAGAGGAAGTCTCTACATCAAAAAGTTCCAAGAATTTTTCCGTTAATGATATAACATTCTCGATTAGTTTACCGAGGTAA	2046	0.4057	MFQSLWQITKLSKHFMIGTQGKVRSICFSFLLLLSFKSFSTKAKAQSLGSNCENTTQQTLTGAYQTNLDRILTWMSSDAGTSNGYNHTTIGTNSSVYGLYDCGGDAVGYFCQFCISTAAREAPQLCSNRESAVVWNDYCIIRYSNEDFFGKAMTYPIWHTLGTKNISNTTEIQIAEDFVRSLIGKATNETHQLYYKDGFNLSATESRYAVVQCTRDLTNEGCRQCLEDILTEVPKCCEQKVTWMVWSGSCLIRYDDHMFYLLANQPPSAPAPNQKTDKQGVNNRTRILIIIFSVIGAIIVLCFSLYCIWYRKRVRKANYKENTRDGVREELPLPSFHKIQSEETWNTDLPRIPFITILQSTDNFSVASKLGEGGFGPVYKGNLPDGRQIAVKRLSKFSGQGSEEFNNEVMFIAKLRHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDVERRKQFDWKLRLSIIHGIARGILYLHEDSQLRVIHRDLKASNVLLDLDMNPKISDFGLARAFEVGQNQANTKRVMGTFGYMAPEYAMDGLFSVKSDIFSFGVLVLEIICGRKNGGFYMSDGQTLLVYAWRTWSEGKCLEMMDPMLEKSFIGSEVERCIQIGLLCVQEDARDRPTMSDVLVMLASDTVVIPKPKHPAFSIGRLASEEVSTSKSSKNFSVNDITFSISLPR	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00303	681	SMART	serkin_6	364	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00303	681	Pfam	Domain of unknown function (DUF3403)	636	681	IPR021820	GO:0004674
	Viun11g00303	681	ProSiteProfiles	Gnk2-homologous domain profile.	154	259	IPR002902	-
	Viun11g00303	681	ProSiteProfiles	Protein kinase domain profile.	364	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00303	681	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	58	677	-	-
	Viun11g00303	681	Pfam	Protein tyrosine and serine/threonine kinase	366	632	IPR001245	GO:0004672\|GO:0006468
	Viun11g00303	681	SUPERFAMILY	Protein kinase-like (PK-like)	347	653	IPR011009	-
	Viun11g00303	681	Gene3D	-	44	148	IPR038408	-
	Viun11g00303	681	Gene3D	-	155	259	IPR038408	-
	Viun11g00303	681	Gene3D	Phosphorylase Kinase; domain 1	332	439	-	-
	Viun11g00303	681	Pfam	Salt stress response/antifungal	52	145	IPR002902	-
	Viun11g00303	681	Pfam	Salt stress response/antifungal	176	256	IPR002902	-
	Viun11g00303	681	FunFam	cysteine-rich receptor-like protein kinase 10	440	641	-	-
	Viun11g00303	681	FunFam	Cysteine-rich receptor-like protein kinase 10	328	439	-	-
	Viun11g00303	681	ProSiteProfiles	Gnk2-homologous domain profile.	46	148	IPR002902	-
	Viun11g00303	681	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	485	497	IPR008271	GO:0004672\|GO:0006468
	Viun11g00303	681	FunFam	Cysteine-rich receptor-like protein kinase 28	48	147	-	-
	Viun11g00303	681	CDD	STKc_IRAK	370	634	-	-
	Viun11g00303	681	Gene3D	Transferase(Phosphotransferase) domain 1	440	641	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00303	Viun-Chr11	2603364	2606562	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00303	28	681	Receptor kinase-like Gene Family	AT4G05200	40.909	8.74e-170	500

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00303		PK_Tyr_Ser-Thr	3.3e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00303	-		-	pvu:PHAVU_011G194300g	997.653