LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00301	ATGATGGTGACACAAGCATGCTTTGGTTTCTTCTTATTACTAAGTTGGGGAACACTAGTTAGAAAGGCACAAACACAGATATTTGTGGGAAGTAATTGCCAAAACACCTCCCAAGAGCCTCTCAGCAGTGCATACCAAGCCAATCTTGATAAGATCCTCGCATGGATGCCTTCTGATGCAGCCACAAGCAGAGGCTATAACCACACCAGAATAGGCATCAACACTCCAGTGTATGGCCAATATGATTGCCGTGGTGATGTTGCTGAAAGCTTTTGCCATTTCTGTGTCTCCCTCGCAGCCAGAGAAGCCCCTAAACGCTGCCCCAATAGGGTTTCTGCTGTAGTGTGGTATGAGTACTGCATGCTAAGGTACTCTAATGAGAGCTTTTTTGGGAAAATTCTCACACACCCGACATGGCATGGGTTTGGACCAAAAAATGTATCCAACATGGAAGAGGTTCGTAGAGGTGAAGGTTTTGTGAAAAGTATGATCAGTAAAGCAACTAAGGAAACCAACCAGTTGTACTATTTGGGTGGCTTCAATTTGAGTTCCACTCAGAAAAGGTATGGCATGGTGCACTGTGGCAGAGATCTCTCAAATGAAGGGTGCAGACAGTGTTTGGAGTTTTTATTAGCACAAATTCACAAATGTTGCGAGCAAAAAATAGGATGGTTTATTTGGTCTGGAACTTGTATGATAAGGTATGATGATCAAATGTTCTACCGTCTTAGCAACCAAACATCTTCACTTTCTCCGTCAAATGATGAAAAAGATAAACAAAGGGCTTATAGGAGGTCAAAAATCTTAATCATTAGCAGCAGTATTATGGGGTCAGTACTAATTCTATGTTTGAGCGTTTATTGCATCTGGTACAGGAGAAGAGTTAGAAAAGATGGGTTTCGTCTATCTTCGTTTCACAAAATTCAAACAGAGGATTCATGGACCACAGACCTTCCTATAATCCCATTAACCACAATTCTGCAGAGCACTGATAACTTTTCAGAAGCATGTAAATTAGGGGAAGGAGGATTTGGCACTGTTTACAAGGGAGTTCTAGCAGATGGAACTCAAATTGCAGTCAAAAGGCTCTCAAAGTTTTCAGGTCAAGGCTCGGAGGAGTTTAATAACGAAGTCCTGTTCATAGCTAACTTGCAACATCGCAATCTGGTTAGACTTTTGGCATGTTGCTTGGACGAAAATGAAAACATACTAGTATATGAGTATTTGCCGAATAAAAGTTTAGACTTTCACCTCTTTGATGATGAGAAGAGAAAGCAGTTTGATTGGAAACTAAGATTAAGGATTATCAATGGAATAGCAAGAGGTATTTTATACCTTCATGAGGATTCTAGAGTCACAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGACATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAATAGGACAGAAGCAGGCAAATACAAAACGAGTAATGGGCACTTATGGATACATGGCTCCAGAGTATGTTATGCAAGGAGTGTTTTCGGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAGATCATTTATGGGAGAAAGAACAGTGGATTGTCAGAACATGGTCAAACTCTTCTTTTATATGCTTGGAGAACATGGAGCGCAGGAAAATGTTTGGAAATGATTGATCCAATGCTTGAAAATTCCTTCATAGGCAGTGAAGTTGAGAGGTGTATACACATTGGTTTGTTGTGTGTTCAAGAAGATGCTAAGGATAGACCAACAATGTCTCATGTGGTTTTAATGCTGGCAAGTGATACAATGGTTCTTCCAAAACCCAAACACCCTGCATTTTCAGTTGGAATAATAGCCTCTGAAGAAGTGTACACATCAAAAAGTTCCAAGGATGTTTCTAAAAATGATCTAACAGTCTCTATTTCTTTACCAAGGTGA	1950	0.3995	MMVTQACFGFFLLLSWGTLVRKAQTQIFVGSNCQNTSQEPLSSAYQANLDKILAWMPSDAATSRGYNHTRIGINTPVYGQYDCRGDVAESFCHFCVSLAAREAPKRCPNRVSAVVWYEYCMLRYSNESFFGKILTHPTWHGFGPKNVSNMEEVRRGEGFVKSMISKATKETNQLYYLGGFNLSSTQKRYGMVHCGRDLSNEGCRQCLEFLLAQIHKCCEQKIGWFIWSGTCMIRYDDQMFYRLSNQTSSLSPSNDEKDKQRAYRRSKILIISSSIMGSVLILCLSVYCIWYRRRVRKDGFRLSSFHKIQTEDSWTTDLPIIPLTTILQSTDNFSEACKLGEGGFGTVYKGVLADGTQIAVKRLSKFSGQGSEEFNNEVLFIANLQHRNLVRLLACCLDENENILVYEYLPNKSLDFHLFDDEKRKQFDWKLRLRIINGIARGILYLHEDSRVTVIHRDLKASNVLLDHDMNPKISDFGLARAFEIGQKQANTKRVMGTYGYMAPEYVMQGVFSVKSDVFSFGVLVLEIIYGRKNSGLSEHGQTLLLYAWRTWSAGKCLEMIDPMLENSFIGSEVERCIHIGLLCVQEDAKDRPTMSHVVLMLASDTMVLPKPKHPAFSVGIIASEEVYTSKSSKDVSKNDLTVSISLPR	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00301	649	ProSiteProfiles	Gnk2-homologous domain profile.	135	240	IPR002902	-
	Viun11g00301	649	FunFam	cysteine-rich receptor-like protein kinase 10	409	609	-	-
	Viun11g00301	649	ProSiteProfiles	Protein kinase domain profile.	333	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00301	649	SUPERFAMILY	Protein kinase-like (PK-like)	307	602	IPR011009	-
	Viun11g00301	649	CDD	STKc_IRAK	339	602	-	-
	Viun11g00301	649	ProSitePatterns	Protein kinases ATP-binding region signature.	339	361	IPR017441	GO:0005524
	Viun11g00301	649	FunFam	Cysteine-rich receptor-like protein kinase 28	29	128	-	-
	Viun11g00301	649	FunFam	Cysteine-rich receptor-like protein kinase 10	296	408	-	-
	Viun11g00301	649	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	454	466	IPR008271	GO:0004672\|GO:0006468
	Viun11g00301	649	ProSiteProfiles	Gnk2-homologous domain profile.	27	129	IPR002902	-
	Viun11g00301	649	Gene3D	-	25	129	IPR038408	-
	Viun11g00301	649	Gene3D	-	142	240	IPR038408	-
	Viun11g00301	649	Gene3D	Phosphorylase Kinase; domain 1	298	408	-	-
	Viun11g00301	649	SMART	serkin_6	333	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00301	649	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	31	645	-	-
	Viun11g00301	649	Pfam	Salt stress response/antifungal	33	126	IPR002902	-
	Viun11g00301	649	Pfam	Salt stress response/antifungal	173	237	IPR002902	-
	Viun11g00301	649	Pfam	Protein tyrosine and serine/threonine kinase	337	600	IPR001245	GO:0004672\|GO:0006468
	Viun11g00301	649	Gene3D	Transferase(Phosphotransferase) domain 1	409	609	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00301	Viun-Chr11	2591426	2594424	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00301	33	649	Receptor kinase-like Gene Family	AT4G05200	42.040	3.13e-168	495

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun11g00301		PK_Tyr_Ser-Thr	1.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00301	-		-	gmx:100795922	883.634