Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00300 ATGAGGATCAAGACAGAGATATTGATGAGCCCTATTAGGGTTAGTCTTAGTTTCACGTTCCTCCTTTTCACCACAGCAAGTGGTCAACCACCGATTTACATGTACAATTTTTGTGAGAACTCAACTCTCGTTAGCTCTTCATACAGAAGCAACGTTGAAAGCCTTCTCTCATGGGTAACCACAGACTCATTCAAAAGCGATGGATACAACTTCACCACCGTAAATAGCAACAGCCACAACAATGATGATGATGTCTATGGGTTGTACAGCTGCAGATACGACATGACAGGGTATTTTTGCCAGTTCTGCATCACCACTGCTGCCAGTGAACTCTCTCGGAGGTGTCCCAACGCTGTAAGAGCTATCATATGGTATGATATATGCATCATCCGTTACTCAAACCAAAGTTTCAATGCCAAAGTTAGTTTAACCCCAACATGGAATATTACAGGACCCAGAATAATCAAGGATTCATCCGAATCTAGGAAAGCTGTGGATTCTATGAATGATTTGATATGGAAAGCAACGGTAGAGACGAAGAAGTTTTGGGCAGTGGAAGAGTTTGATTGGGTTGAGAATGAAAAAAGATATGGTTGGGTGCAGTGTGATAGGGATATTAAAAATGATGAATGTGGTGATTGTCTGCATGCATTGTTAGATATATTTCCAGACTGTTGTTCAACACATGCACAGTGGGCAATTTTTGGTCCAAGTTGTGGCATCAGGATGGATGATGAGAAGTTCTACCAGACTTCAGGCAATGGAGGTTCTACTAAGTCAAGAAAGTTGATCATTTCCTTTAGTGTGTTGGGGTCTGTAGTTCTACTATGCTTCAGTGTCTACTGTTTCTGGTACAGGAAAAGAGTAAGAAGAGATAAGATGATGTTTGATGAGGAAAAATTGAATGGAGATCTGCCTATAATCCCATTAATCGCAGTTCTGCATAGTACTAATAACTTTTCAGAAGAATCTAAATTAGGGGAAGGTGGATTTGGCCCTGTATACAAGGGAATTCTACCAGATGGAAGGCAAATTGCAGTGAAAAGGCTCTCAAAATTTTCTGGTCAGGGCTCACAGGAGTTCAAGAATGAAGTAATGTTTATAGCCAAATTGCAACATCGTAACCTCGTGAGACTTTTGGGATGCTGCTTAGAGGAAAATGAGAATATACTTGTATATGAGTATATGTGTAATGCAAGCCTTGATTCTCATCTCTTTGGTGGCATAGAGAAGAGAAAGCAACTTGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAAAGGTATTTTATATCTTCATGAAGACTCTCGACTCAAAGTAATTCACAGAGATCTCAAAGGTAGTAATGTTCTATTAGACCATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCCAGGGCCTTTGAAATAGGACAGAACCAAGCAAATACAAAACGAGTAGTGGGCACCTATGGATACATGGCTCCAGAGTATGCCATGGAAGGATTATTTTCCGTGAAATCTGATGTTTTCAGCTTTGGAGTTATTGTCCTAGAAATCATTTGTGGAAGAAAGAACAGTGGATTCCATCGATCAGAACATGGCCAAAGTCTTCTTTTATATGCTTGGAACATATGGTGTGAAGGAAGATGTTTGGAATTGATGGATCCAGCACTGATAAAATCCTTCATAGCCAGTGAGGTTGTGAAGTGCATACACGTTGGTTTGCTTTGTGTTCAACAAGATGCAGCAGATAGACCAACCATGTCAACGGTTGTTCTGATGCTAGGAAGTGACACAATGACCCTTCCAAAACCCAATCACCCTGCATATTCTGTTGGAAGATTGACCTCTAATGATGCATCAACTTCAAGAAGTTCCAAGAATCTCTCTATTAATGATGTAACATTCTCAACCGTTTTAGCAAGATAA 1920 0.3984 MRIKTEILMSPIRVSLSFTFLLFTTASGQPPIYMYNFCENSTLVSSSYRSNVESLLSWVTTDSFKSDGYNFTTVNSNSHNNDDDVYGLYSCRYDMTGYFCQFCITTAASELSRRCPNAVRAIIWYDICIIRYSNQSFNAKVSLTPTWNITGPRIIKDSSESRKAVDSMNDLIWKATVETKKFWAVEEFDWVENEKRYGWVQCDRDIKNDECGDCLHALLDIFPDCCSTHAQWAIFGPSCGIRMDDEKFYQTSGNGGSTKSRKLIISFSVLGSVVLLCFSVYCFWYRKRVRRDKMMFDEEKLNGDLPIIPLIAVLHSTNNFSEESKLGEGGFGPVYKGILPDGRQIAVKRLSKFSGQGSQEFKNEVMFIAKLQHRNLVRLLGCCLEENENILVYEYMCNASLDSHLFGGIEKRKQLDWKLRLSIINGIAKGILYLHEDSRLKVIHRDLKGSNVLLDHEMNPKISDFGLARAFEIGQNQANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVIVLEIICGRKNSGFHRSEHGQSLLLYAWNIWCEGRCLELMDPALIKSFIASEVVKCIHVGLLCVQQDAADRPTMSTVVLMLGSDTMTLPKPNHPAYSVGRLTSNDASTSRSSKNLSINDVTFSTVLAR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00300 639 ProSiteProfiles Gnk2-homologous domain profile. 30 137 IPR002902 -
Viun11g00300 639 Pfam Domain of unknown function (DUF3403) 594 639 IPR021820 GO:0004674
Viun11g00300 639 FunFam Uncharacterized protein 396 598 - -
Viun11g00300 639 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Viun11g00300 639 SUPERFAMILY Protein kinase-like (PK-like) 305 592 IPR011009 -
Viun11g00300 639 Gene3D Phosphorylase Kinase; domain 1 282 395 - -
Viun11g00300 639 Pfam Protein tyrosine and serine/threonine kinase 323 589 IPR001245 GO:0004672|GO:0006468
Viun11g00300 639 ProSiteProfiles Protein kinase domain profile. 320 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00300 639 Gene3D - 148 248 IPR038408 -
Viun11g00300 639 Gene3D - 32 137 IPR038408 -
Viun11g00300 639 SMART serkin_6 320 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00300 639 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 85 635 - -
Viun11g00300 639 Gene3D Transferase(Phosphotransferase) domain 1 396 601 - -
Viun11g00300 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Viun11g00300 639 CDD STKc_IRAK 326 592 - -
Viun11g00300 639 Pfam Salt stress response/antifungal 44 135 IPR002902 -
Viun11g00300 639 Pfam Salt stress response/antifungal 181 244 IPR002902 -
Viun11g00300 639 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 285 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00300 Viun-Chr11 2583442 2588762 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00300 18 639 Receptor kinase-like Gene Family AT4G05200 40.390 2.24e-168 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00300 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00300 - - var:108339138 1042.72